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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-25 10:35:39 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-25 10:35:39 +0200
commite514f8235ee5398da5c5c83d472ca99dd5324066 (patch)
treee096590d36e900d8b087ba5282624474b770d05a /log/test.log
parent5ac21a5495d984eb6a281973211b2b79a78cda82 (diff)
Complete documentation and fix a bug
The bug was introduced by the changes in summary.saem.mmkin.R and surfaced in the tests when using saemix transformations.
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log22
1 files changed, 11 insertions, 11 deletions
diff --git a/log/test.log b/log/test.log
index d7d623d7..b6ec2084 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,11 +1,11 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.2s]
+✔ | 5 | Analytical solutions for coupled models [3.3s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [31.3s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.6s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,7 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.4s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.3s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits
@@ -29,20 +29,20 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 3 | Model predictions with mkinpredict [0.4s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s]
-✔ | 16 | Plotting [9.7s]
+✔ | 16 | Plotting [9.9s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 37 | saemix parent models [208.2s]
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
+✔ | 37 | saemix parent models [208.7s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.3s]
✔ | 11 | Processing of residue series
-✔ | 7 | Fitting the SFORB model [3.6s]
+✔ | 7 | Fitting the SFORB model [3.8s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
-✔ | 9 | Hypothesis tests [7.6s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
+✔ | 9 | Hypothesis tests [7.8s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 304.2 s
+Duration: 305.6 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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