aboutsummaryrefslogtreecommitdiff
path: root/log
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2022-10-31 17:01:58 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-31 17:01:58 +0100
commit300aa6ec27529f46deda07874566dc8fcee4e6e7 (patch)
tree5a78a7bad10e569d439060ee09547e27f9a45c7b /log
parente444e3eb3e21c66c34ce48775467cd9fa53f2a92 (diff)
Fix R CMD check
Diffstat (limited to 'log')
-rw-r--r--log/check.log2
-rw-r--r--log/test.log20
2 files changed, 11 insertions, 11 deletions
diff --git a/log/check.log b/log/check.log
index c2b4aa50..36bd30ca 100644
--- a/log/check.log
+++ b/log/check.log
@@ -5,7 +5,7 @@
* using options ‘--no-tests --as-cran’
* checking for file ‘mkin/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘mkin’ version ‘1.1.2’
+* this is package ‘mkin’ version ‘1.2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
diff --git a/log/test.log b/log/test.log
index b4298c40..bb81dd43 100644
--- a/log/test.log
+++ b/log/test.log
@@ -5,18 +5,18 @@
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [31.7s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.9s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.0s]
+✔ | 14 | Error model fitting [4.9s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.4s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [15.8s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
@@ -27,12 +27,12 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 7 | Multistart method for saem.mmkin models [38.1s]
+✔ | 7 | Multistart method for saem.mmkin models [36.3s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.4s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s]
-✔ | 16 | Plotting [9.8s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.9s]
+✔ | 16 | Plotting [9.9s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [72.0s]
+✔ | 1 36 | saemix parent models [72.6s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_saemix_parent.R:152:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
@@ -43,11 +43,11 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
-✔ | 9 | Hypothesis tests [8.3s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
+✔ | 9 | Hypothesis tests [8.1s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 208.6 s
+Duration: 209.2 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

Contact - Imprint