diff options
| author | Johannes Ranke <johannes.ranke@jrwb.de> | 2025-02-16 17:27:18 +0100 |
|---|---|---|
| committer | Johannes Ranke <johannes.ranke@jrwb.de> | 2025-02-16 17:29:28 +0100 |
| commit | 4f62f39b8979cb3a5c52d65d425e530dc0770665 (patch) | |
| tree | 895d4bde0773a600943e5c308e17651c12358a67 /log | |
| parent | 44c30938872bd7cc80a4c84dd4db593e26000fce (diff) | |
The special case occurs if not observed data for time zero
are available. Fixes #16. Write NEWS and update docs.
A lot of html was regenerated, because I had checked out
the main branch in between, which made pkgdown believe that
I have changed the help files.
Diffstat (limited to 'log')
| -rw-r--r-- | log/build.log | 2 | ||||
| -rw-r--r-- | log/test.log | 27 |
2 files changed, 15 insertions, 14 deletions
diff --git a/log/build.log b/log/build.log index de7e4488..c39714cb 100644 --- a/log/build.log +++ b/log/build.log @@ -7,5 +7,5 @@ * checking for empty or unneeded directories Removed empty directory ‘mkin/inst/rmarkdown/templates/hierarchical_kinetics_parent’ Removed empty directory ‘mkin/vignettes/web_only’ -* building ‘mkin_1.2.9.tar.gz’ +* building ‘mkin_1.2.10.tar.gz’ diff --git a/log/test.log b/log/test.log index 746f0458..f475b7d5 100644 --- a/log/test.log +++ b/log/test.log @@ -1,29 +1,30 @@ ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [1.6s] +✔ | 5 | Analytical solutions for coupled models [1.5s] ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE -✔ | 6 | Use of precompiled symbols in mkinpredict [3.3s] +✔ | 6 | Use of precompiled symbols in mkinpredict [3.2s] ✔ | 12 | Confidence intervals and p-values -✔ | 1 12 | Dimethenamid data from 2018 [13.3s] -✔ | 14 | Error model fitting [2.7s] +✔ | 1 | Solutions with deSolve +✔ | 1 12 | Dimethenamid data from 2018 [13.1s] +✔ | 14 | Error model fitting [2.5s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 4 | Test fitting the decline of metabolites from their maximum ✔ | 1 | Fitting the logistic model -✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.7s] -✔ | 2 16 | Nonlinear mixed-effects models [148.2s] +✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.6s] +✔ | 2 16 | Nonlinear mixed-effects models [145.0s] ✔ | 3 | Test dataset classes mkinds and mkindsg ✔ | 10 | Special cases of mkinfit calls ✔ | 3 | mkinfit features ✔ | 8 | mkinmod model generation and printing -✔ | 3 | Model predictions with mkinpredict -✔ | 12 | Multistart method for saem.mmkin models [23.7s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.6s] -✔ | 9 | Nonlinear mixed-effects models with nlme [4.2s] -✔ | 15 | Plotting [4.6s] +✔ | 4 | Model predictions with mkinpredict +✔ | 12 | Multistart method for saem.mmkin models [22.9s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s] +✔ | 9 | Nonlinear mixed-effects models with nlme [4.0s] +✔ | 15 | Plotting [4.7s] ✔ | 4 | Residuals extracted from mkinfit models ✔ | 1 38 | saemix parent models [35.9s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper @@ -37,7 +38,7 @@ ✔ | 2 | water-sediment ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 268.8 s +Duration: 264.5 s ── Skipped tests (4) ─────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 5 minutes on my new system @@ -48,4 +49,4 @@ Duration: 268.8 s • This still takes almost 2.5 minutes although we do not solve ODEs (1): 'test_saemix_parent.R:143:3' -[ FAIL 0 | WARN 0 | SKIP 4 | PASS 285 ] +[ FAIL 0 | WARN 0 | SKIP 4 | PASS 287 ] |