diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-05 08:10:43 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-05 08:10:43 +0200 |
| commit | e7e8105390ebf3d6f034811bc7cce1d9640b7357 (patch) | |
| tree | 55f79edc01f86530c65eec012b70e6ece205b4db /log | |
| parent | 3d0d6af9f87c23ca3e223a21c892c97fe95d346a (diff) | |
Simplify the removal of random effects
This is achieved by introducing the argument 'no_random_effect' to the
saem function.
Diffstat (limited to 'log')
| -rw-r--r-- | log/test.log | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/log/test.log b/log/test.log index df663253..942ed50d 100644 --- a/log/test.log +++ b/log/test.log @@ -5,7 +5,7 @@ ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.9s] +✔ | 1 12 | Dimethenamid data from 2018 [31.6s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system @@ -16,7 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.3s] +✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s] ✔ | 1 12 | Nonlinear mixed-effects models [0.3s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits @@ -26,26 +26,26 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 10 | Special cases of mkinfit calls [0.4s] ✔ | 3 | mkinfit features [0.7s] ✔ | 8 | mkinmod model generation and printing [0.2s] -✔ | 3 | Model predictions with mkinpredict [0.4s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s] +✔ | 3 | Model predictions with mkinpredict [0.3s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s] ✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s] -✔ | 16 | Plotting [9.9s] +✔ | 16 | Plotting [9.7s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 28 | saemix parent models [181.0s] +✔ | 35 | saemix parent models [191.8s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] ✔ | 11 | Processing of residue series ✔ | 7 | Fitting the SFORB model [3.8s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.2s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] -✔ | 9 | Hypothesis tests [8.0s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s] +✔ | 9 | Hypothesis tests [7.8s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 279.0 s +Duration: 288.9 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) • Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 0 | WARN 0 | SKIP 2 | PASS 246 ] +[ FAIL 0 | WARN 0 | SKIP 2 | PASS 253 ] |