Use roxygen for functions and methods

1 files changed, 46 insertions, 33 deletions

diff --git a/man/nafta.Rd b/man/nafta.Rd
index 6917d0e9..49c13afc 100644
--- a/man/nafta.Rd
+++ b/man/nafta.Rd
@@ -1,52 +1,65 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/nafta.R
 \name{nafta}
 \alias{nafta}
-\title{
-Evaluate parent kinetics using the NAFTA guidance
+\alias{print.nafta}
+\title{Evaluate parent kinetics using the NAFTA guidance}
+\source{
+NAFTA (2011) Guidance for evaluating and calculating degradation
+  kinetics in environmental media. NAFTA Technical Working Group on
+  Pesticides
+  \url{https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation}
+  accessed 2019-02-22
+
+  US EPA (2015) Standard Operating Procedure for Using the NAFTA Guidance to
+  Calculate Representative Half-life Values and Characterizing Pesticide
+  Degradation
+  \url{https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance}
 }
 \usage{
-nafta(ds, title = NA, quiet = FALSE, \dots)
-}
-\description{
-  The function fits the SFO, IORE and DFOP models using
-  \code{\link{mmkin}} and returns an object of class
-  \code{nafta} that has methods for printing and plotting.
+nafta(ds, title = NA, quiet = FALSE, ...)
+
+\method{print}{nafta}(x, quiet = TRUE, digits = 3, ...)
 }
 \arguments{
-  \item{ds}{
-    A dataframe that must contain one variable called "time" with the time
-    values specified by the \code{time} argument, one column called "name" with
-    the grouping of the observed values, and finally one column of observed
-    values called "value".
-  }
-  \item{title}{ Optional title of the dataset }
-  \item{quiet}{ Should the evaluation text be shown? }
-  \item{\dots}{
-    Further arguments passed to \code{\link{mmkin}}.
-  }
+\item{ds}{A dataframe that must contain one variable called "time" with the
+time values specified by the \code{time} argument, one column called
+"name" with the grouping of the observed values, and finally one column of
+observed values called "value".}
+
+\item{title}{Optional title of the dataset}
+
+\item{quiet}{Should the evaluation text be shown?}
 
+\item{\dots}{Further arguments passed to \code{\link{mmkin}} (not for the
+printing method).}
+
+\item{x}{An \code{\link{nafta}} object.}
+
+\item{digits}{Number of digits to be used for printing parameters and
+dissipation times.}
 }
 \value{
-  An list of class \code{nafta}. The list element named "mmkin" is the
-  \code{\link{mmkin}} object containing the fits of the three models.
-  The list element named "title" contains the title of the dataset used.
-  The list element "data" contains the dataset used in the fits.
+An list of class \code{nafta}. The list element named "mmkin" is the
+  \code{\link{mmkin}} object containing the fits of the three models. The
+  list element named "title" contains the title of the dataset used. The
+  list element "data" contains the dataset used in the fits.
 }
-\source{
-  NAFTA (2011) Guidance for evaluating and calculating degradation kinetics
-  in environmental media. NAFTA Technical Working Group on Pesticides
-  \url{https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation}
-  accessed 2019-02-22
+\description{
+The function fits the SFO, IORE and DFOP models using \code{\link{mmkin}}
+and returns an object of class \code{nafta} that has methods for printing
+and plotting.
 
-  US EPA (2015) Standard Operating Procedure for Using the NAFTA Guidance to
-  Calculate Representative Half-life Values and Characterizing Pesticide
-  Degradation
-  \url{https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance}
+Print nafta objects. The results for the three models are printed in the
+order of increasing model complexity, i.e. SFO, then IORE, and finally DFOP.
 }
 \examples{
+
   nafta_evaluation <- nafta(NAFTA_SOP_Appendix_D, cores = 1)
   print(nafta_evaluation)
   plot(nafta_evaluation)
+
 }
 \author{
-  Johannes Ranke
+Johannes Ranke
 }