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authorJohannes Ranke <jranke@uni-bremen.de>2021-06-11 11:14:45 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2021-06-11 11:14:45 +0200
commit0c9b2f0e3c8ce65cb790c9e048476784cbbea070 (patch)
tree578f716c9daaff9502a95178e2d6ba63da438fbe /man/nlmixr.mmkin.Rd
parentc6eb6b2bb598002523c3d34d71b0e4a99671ccd6 (diff)
Finished 'summary.nlmixr.mmkin', checks, docs
Diffstat (limited to 'man/nlmixr.mmkin.Rd')
-rw-r--r--man/nlmixr.mmkin.Rd24
1 files changed, 19 insertions, 5 deletions
diff --git a/man/nlmixr.mmkin.Rd b/man/nlmixr.mmkin.Rd
index 86bbdc9f..4ab30272 100644
--- a/man/nlmixr.mmkin.Rd
+++ b/man/nlmixr.mmkin.Rd
@@ -29,7 +29,8 @@ nlmixr_model(
degparms_start = "auto",
test_log_parms = FALSE,
conf.level = 0.6,
- error_model = object[[1]]$err_mod
+ error_model = object[[1]]$err_mod,
+ add_attributes = FALSE
)
nlmixr_data(object, ...)
@@ -38,9 +39,16 @@ nlmixr_data(object, ...)
\item{object}{An \link{mmkin} row object containing several fits of the same
\link{mkinmod} model to different datasets}
+\item{data}{Not used, as the data are extracted from the mmkin row object}
+
\item{est}{Estimation method passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}}
-\item{control}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}.}
+\item{control}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}}
+
+\item{table}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}}
+
+\item{error_model}{Possibility to override the error model which is being
+set based on the error model used in the mmkin row object.}
\item{test_log_parms}{If TRUE, an attempt is made to use more robust starting
values for population parameters fitted as log parameters in mkin (like
@@ -52,6 +60,10 @@ for parameter that are tested if requested by 'test_log_parms'.}
\item{\dots}{Passed to \link{nlmixr_model}}
+\item{save}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}}
+
+\item{envir}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}}
+
\item{x}{An nlmixr.mmkin object to print}
\item{digits}{Number of digits to use for printing}
@@ -59,8 +71,9 @@ for parameter that are tested if requested by 'test_log_parms'.}
\item{degparms_start}{Parameter values given as a named numeric vector will
be used to override the starting values obtained from the 'mmkin' object.}
-\item{solution_type}{Possibility to specify the solution type in case the
-automatic choice is not desired}
+\item{add_attributes}{Should the starting values used for degradation model
+parameters and their distribution and for the error model parameters
+be returned as attributes?}
}
\value{
An S3 object of class 'nlmixr.mmkin', containing the fitted
@@ -81,9 +94,11 @@ An mmkin row object is essentially a list of mkinfit objects that have been
obtained by fitting the same model to a list of datasets using \link{mkinfit}.
}
\examples{
+\dontrun{
ds <- lapply(experimental_data_for_UBA_2019[6:10],
function(x) subset(x$data[c("name", "time", "value")]))
names(ds) <- paste("Dataset", 6:10)
+
f_mmkin_parent <- mmkin(c("SFO", "FOMC", "DFOP", "HS"), ds, quiet = TRUE, cores = 1)
f_mmkin_parent_tc <- mmkin(c("SFO", "FOMC", "DFOP"), ds, error_model = "tc",
cores = 1, quiet = TRUE)
@@ -117,7 +132,6 @@ AIC(nlme(f_mmkin_parent["HS", ]))
# solution, the two-component error model does not improve it
plot(f_nlmixr_fomc_saem)
-\dontrun{
sfo_sfo <- mkinmod(parent = mkinsub("SFO", "A1"),
A1 = mkinsub("SFO"))
fomc_sfo <- mkinmod(parent = mkinsub("FOMC", "A1"),

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