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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-13 03:51:22 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-14 14:46:18 +0200
commitb76e401a854021eaeda6f8ba262baf37b4ecfac2 (patch)
treeb3c80276c320080c239eb8508e86c9e06b526143 /man/parhist.Rd
parent37bd36fe8a75163cbf0f97cb7a0e2f7466a53617 (diff)
Select best fit from multistart, use in parhist
- Add 'best' and 'which.best' generics with methods for multistart objects - Per default, scale the parameters in parhist plots using the fit with the highest log likelihood.
Diffstat (limited to 'man/parhist.Rd')
-rw-r--r--man/parhist.Rd16
1 files changed, 13 insertions, 3 deletions
diff --git a/man/parhist.Rd b/man/parhist.Rd
index a8319283..67bbadad 100644
--- a/man/parhist.Rd
+++ b/man/parhist.Rd
@@ -4,11 +4,20 @@
\alias{parhist}
\title{Plot parameter distributions from multistart objects}
\usage{
-parhist(object, lpos = "bottomleft", main = "", ...)
+parhist(
+ object,
+ scale = c("best", "median"),
+ lpos = "bottomleft",
+ main = "",
+ ...
+)
}
\arguments{
\item{object}{The \link{multistart} object}
+\item{scale}{By default, scale parameters using the best available fit.
+If 'median', parameters are scaled using the median parameters from all fits.}
+
\item{lpos}{Positioning of the legend.}
\item{main}{Title of the plot}
@@ -16,8 +25,9 @@ parhist(object, lpos = "bottomleft", main = "", ...)
\item{\dots}{Passed to \link{boxplot}}
}
\description{
-Produces a boxplot with all parameters from the multiple runs, divided by
-using their medians as in the paper by Duchesne et al. (2021).
+Produces a boxplot with all parameters from the multiple runs, scaled
+either by the parameters of the run with the highest likelihood,
+or by their medians as proposed in the paper by Duchesne et al. (2021).
}
\references{
Duchesne R, Guillemin A, Gandrillon O, Crauste F. Practical

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