Remove nlmixr interface for release of mkin 1.1.0

I am postponing my attempts to get the nlmixr interface to CRAN, given
some problems with nlmixr using R-devel under Windows, see
https://github.com/nlmixrdevelopment/nlmixr/issues/596
and
https://github.com/r-hub/rhub/issues/512,
which is fixed by the removal of nlmixr from the testsuite.

For the tests to be more platform independent, the biphasic mixed
effects models test dataset was defined in a way that fitting
should be more robust (less ill-defined).

1 files changed, 0 insertions, 46 deletions

diff --git a/man/tffm0.Rd b/man/tffm0.Rd
deleted file mode 100644
index 89bee7d9..00000000
--- a/man/tffm0.Rd
+++ /dev/null
@@ -1,46 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/tffm0.R
-\name{tffm0}
-\alias{tffm0}
-\alias{invtffm0}
-\title{Transform formation fractions as in the first published mkin version}
-\usage{
-tffm0(ff)
-
-invtffm0(ff_trans)
-}
-\arguments{
-\item{ff}{Vector of untransformed formation fractions. The sum
-must be smaller or equal to one}
-
-\item{ff_trans}{Vector of transformed formation fractions that can be
-restricted to the interval from 0 to 1}
-}
-\value{
-A vector of the transformed formation fractions
-
-A vector of backtransformed formation fractions for natural use in degradation models
-}
-\description{
-This transformation was used originally in mkin, in order to implement a
-constraint for the sum of formation fractions to be smaller than 1.  It was
-later replaced by the \link{ilr} transformation because the ilr transformed
-fractions can assumed to follow normal distribution. As the ilr
-transformation is not available in \link{RxODE} and can therefore not be used in
-the nlmixr modelling language, the original transformation is currently used
-for translating mkin models with formation fractions to more than one target
-compartment for fitting with nlmixr in \link{nlmixr_model}. However, this
-implementation cannot be used there, as it is not accessible from RxODE.
-}
-\details{
-If the transformed formation fractions are restricted to the interval
-between 0 and 1, the sum of backtransformed values is restricted
-to this interval.
-}
-\examples{
-ff_example <- c(
-  0.10983681, 0.09035905, 0.08399383
-)
-ff_example_trans <- tffm0(ff_example)
-invtffm0(ff_example_trans)
-}