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authorJohannes Ranke <jranke@uni-bremen.de>2021-01-11 12:59:50 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-01-11 12:59:50 +0100
commit4e37669ac2ad3b3138480c3209f414101469fac7 (patch)
tree94172cadfcc05339673d56fdc467c33e696eab1f /man
parentf99bdd8697c3bfbd432a320774a4692fd0e1241a (diff)
Rebuild docs
Diffstat (limited to 'man')
-rw-r--r--man/mccall81_245T.Rd2
-rw-r--r--man/mkinfit.Rd2
-rw-r--r--man/saem.Rd8
-rw-r--r--man/summary.saem.mmkin.Rd2
4 files changed, 7 insertions, 7 deletions
diff --git a/man/mccall81_245T.Rd b/man/mccall81_245T.Rd
index 44a0c2cf..e7eaed94 100644
--- a/man/mccall81_245T.Rd
+++ b/man/mccall81_245T.Rd
@@ -25,7 +25,7 @@
}
\source{
McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labelled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107
- \url{http://dx.doi.org/10.1021/jf00103a026}
+ \doi{10.1021/jf00103a026}
}
\examples{
SFO_SFO_SFO <- mkinmod(T245 = list(type = "SFO", to = "phenol"),
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd
index 768b85d3..b5b24449 100644
--- a/man/mkinfit.Rd
+++ b/man/mkinfit.Rd
@@ -286,7 +286,7 @@ for measurement error in analytical chemistry. \emph{Technometrics} 37(2), 176-1
Ranke J and Meinecke S (2019) Error Models for the Kinetic Evaluation of Chemical
Degradation Data. \emph{Environments} 6(12) 124
-\href{https://doi.org/10.3390/environments6120124}{doi:10.3390/environments6120124}.
+\doi{10.3390/environments6120124}.
}
\seealso{
\link{summary.mkinfit}, \link{plot.mkinfit}, \link{parms} and \link{lrtest}.
diff --git a/man/saem.Rd b/man/saem.Rd
index 969e9a22..775a8e7b 100644
--- a/man/saem.Rd
+++ b/man/saem.Rd
@@ -57,7 +57,7 @@ automatic choice is not desired}
\item{control}{Passed to \link[saemix:saemix]{saemix::saemix}}
\item{verbose}{Should we print information about created objects of
-type \link[saemix:SaemixModel]{saemix::SaemixModel} and \link[saemix:SaemixData]{saemix::SaemixData}?}
+type \link[saemix:SaemixModel-class]{saemix::SaemixModel} and \link[saemix:SaemixData-class]{saemix::SaemixData}?}
\item{suppressPlot}{Should we suppress any plotting that is done
by the saemix function?}
@@ -71,12 +71,12 @@ and the end of the optimisation process?}
}
\value{
An S3 object of class 'saem.mmkin', containing the fitted
-\link[saemix:SaemixObject]{saemix::SaemixObject} as a list component named 'so'. The
+\link[saemix:SaemixObject-class]{saemix::SaemixObject} as a list component named 'so'. The
object also inherits from 'mixed.mmkin'.
-An \link[saemix:SaemixModel]{saemix::SaemixModel} object.
+An \link[saemix:SaemixModel-class]{saemix::SaemixModel} object.
-An \link[saemix:SaemixData]{saemix::SaemixData} object.
+An \link[saemix:SaemixData-class]{saemix::SaemixData} object.
}
\description{
This function uses \code{\link[saemix:saemix]{saemix::saemix()}} as a backend for fitting nonlinear mixed
diff --git a/man/summary.saem.mmkin.Rd b/man/summary.saem.mmkin.Rd
index 4f83489c..67cb3cbb 100644
--- a/man/summary.saem.mmkin.Rd
+++ b/man/summary.saem.mmkin.Rd
@@ -27,7 +27,7 @@ included.}
\item{digits}{Number of digits to use for printing}
}
\value{
-The summary function returns a list based on the \link[saemix:SaemixObject]{saemix::SaemixObject}
+The summary function returns a list based on the \link[saemix:SaemixObject-class]{saemix::SaemixObject}
obtained in the fit, with at least the following additional components
\item{saemixversion, mkinversion, Rversion}{The saemix, mkin and R versions used}
\item{date.fit, date.summary}{The dates where the fit and the summary were

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