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authorJohannes Ranke <jranke@uni-bremen.de>2020-05-12 10:58:25 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-05-12 10:58:25 +0200
commit01284e456dc6df8e064a7a42f194fcd81d9ce7a1 (patch)
tree6c4f035781474e35ffb7675c9a02218f81d416cf /man
parentb88c0140885808ae7443179fe8137dea3b93994f (diff)
Improve documentation, now using a spell checker
Diffstat (limited to 'man')
-rw-r--r--man/add_err.Rd2
-rw-r--r--man/endpoints.Rd2
-rw-r--r--man/logistic.solution.Rd2
-rw-r--r--man/mccall81_245T.Rd2
-rw-r--r--man/mkinfit.Rd2
-rw-r--r--man/mkinpredict.Rd2
-rw-r--r--man/transform_odeparms.Rd2
7 files changed, 7 insertions, 7 deletions
diff --git a/man/add_err.Rd b/man/add_err.Rd
index 1171e0fd..9527d508 100644
--- a/man/add_err.Rd
+++ b/man/add_err.Rd
@@ -96,7 +96,7 @@ plot(f_SFO_SFO[1, 3])
Ranke J and Lehmann R (2015) To t-test or not to t-test, that is
the question. XV Symposium on Pesticide Chemistry 2-4 September 2015,
Piacenza, Italy
-http://chem.uft.uni-bremen.de/ranke/posters/piacenza_2015.pdf
+https://jrwb.de/posters/piacenza_2015.pdf
}
\author{
Johannes Ranke
diff --git a/man/endpoints.Rd b/man/endpoints.Rd
index 49f44d74..2b189a4f 100644
--- a/man/endpoints.Rd
+++ b/man/endpoints.Rd
@@ -21,7 +21,7 @@ of these SFORB models, equivalent to DFOP rate constants
This function calculates DT50 and DT90 values as well as formation fractions
from kinetic models fitted with mkinfit. If the SFORB model was specified
for one of the parents or metabolites, the Eigenvalues are returned. These
-are equivalent to the rate constantes of the DFOP model, but with the
+are equivalent to the rate constants of the DFOP model, but with the
advantage that the SFORB model can also be used for metabolites.
}
\note{
diff --git a/man/logistic.solution.Rd b/man/logistic.solution.Rd
index efa12e7a..22944098 100644
--- a/man/logistic.solution.Rd
+++ b/man/logistic.solution.Rd
@@ -13,7 +13,7 @@ logistic.solution(t, parent_0, kmax, k0, r)
\item{kmax}{Maximum rate constant.}
-\item{k0}{Minumum rate constant effective at time zero.}
+\item{k0}{Minimum rate constant effective at time zero.}
\item{r}{Growth rate of the increase in the rate constant.}
}
diff --git a/man/mccall81_245T.Rd b/man/mccall81_245T.Rd
index 00a05781..fe8dfcc6 100644
--- a/man/mccall81_245T.Rd
+++ b/man/mccall81_245T.Rd
@@ -24,7 +24,7 @@
}
}
\source{
- McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107
+ McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labelled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107
\url{http://dx.doi.org/10.1021/jf00103a026}
}
\examples{
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd
index 97dffef7..5a2b3e53 100644
--- a/man/mkinfit.Rd
+++ b/man/mkinfit.Rd
@@ -199,7 +199,7 @@ obtained by \code{\link{summary.mkinfit}}.
\description{
This function maximises the likelihood of the observed data using the Port
algorithm \code{\link{nlminb}}, and the specified initial or fixed
-parameters and starting values. In each step of the optimsation, the
+parameters and starting values. In each step of the optimisation, the
kinetic model is solved using the function \code{\link{mkinpredict}}. The
parameters of the selected error model are fitted simultaneously with the
degradation model parameters, as both of them are arguments of the
diff --git a/man/mkinpredict.Rd b/man/mkinpredict.Rd
index 2c9192b7..17916356 100644
--- a/man/mkinpredict.Rd
+++ b/man/mkinpredict.Rd
@@ -57,7 +57,7 @@ parameters are used for the prediction.}
kinetic model, which is generally defined as a set of ordinary
differential equations.}
-\item{odeini}{A numeric vectory containing the initial values of the state
+\item{odeini}{A numeric vector containing the initial values of the state
variables of the model. Note that the state variables can differ from the
observed variables, for example in the case of the SFORB model.}
diff --git a/man/transform_odeparms.Rd b/man/transform_odeparms.Rd
index e250483a..a8efb7e6 100644
--- a/man/transform_odeparms.Rd
+++ b/man/transform_odeparms.Rd
@@ -53,7 +53,7 @@ names as the original parameters.
\description{
The transformations are intended to map parameters that should only take on
restricted values to the full scale of real numbers. For kinetic rate
-constants and other paramters that can only take on positive values, a
+constants and other parameters that can only take on positive values, a
simple log transformation is used. For compositional parameters, such as the
formations fractions that should always sum up to 1 and can not be negative,
the \code{\link{ilr}} transformation is used.

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