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| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-26 10:36:19 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-26 10:36:19 +0200 |
| commit | 08e600c0eea6153b433659c08ea49aead5ffd932 (patch) | |
| tree | 2b9e09bd881e392b20fa34b80db7c925687a9037 /man | |
| parent | d25974f643ee46b7cd5ccd8331dd7bb0b14ab27a (diff) | |
Update multistart example code and vignette
Diffstat (limited to 'man')
| -rw-r--r-- | man/multistart.Rd | 11 |
1 files changed, 2 insertions, 9 deletions
diff --git a/man/multistart.Rd b/man/multistart.Rd index d20c0465..ebcc7d80 100644 --- a/man/multistart.Rd +++ b/man/multistart.Rd @@ -61,13 +61,6 @@ started with a certain range of reasonable starting parameters. It is inspired by the article on practical identifiabiliy in the frame of nonlinear mixed-effects models by Duchesne et al (2021). } -\details{ -In case the online version of this help page contains error messages -in the example code and no plots, this is due to the multistart method -not working when called by pkgdown. Please refer to the -\href{https://pkgdown.jrwb.de/mkin/dev/articles/web_only/multistart.html}{online vignette} -in this case. -} \examples{ \dontrun{ library(mkin) @@ -84,7 +77,7 @@ dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE) f_saem_full <- saem(f_mmkin) f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16) -parhist(f_saem_full_multi, lpos = "bottomright") +parhist(f_saem_full_multi, lpos = "bottomleft") illparms(f_saem_full) f_saem_reduced <- update(f_saem_full, no_random_effect = "log_k2") @@ -96,7 +89,7 @@ library(parallel) cl <- makePSOCKcluster(12) clusterExport(cl, "f_mmkin") f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cluster = cl) -parhist(f_saem_reduced_multi, lpos = "bottomright") +parhist(f_saem_reduced_multi, lpos = "topright") } } \references{ |