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authorJohannes Ranke <jranke@uni-bremen.de>2016-06-25 21:07:11 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2016-06-25 21:16:37 +0200
commit43c0ae8431440bab723b35909d43f51434288c33 (patch)
treeef9b4d8df9fc64c9170242dfb355ef041ace9a60 /man
parent693beea972cad4633c1d8baf422913ff3e8d709d (diff)
Fix the plot margins for combined plots
Diffstat (limited to 'man')
-rw-r--r--man/mmkin.Rd15
-rw-r--r--man/plot.mkinfit.Rd2
-rw-r--r--man/plot.mmkin.Rd4
3 files changed, 12 insertions, 9 deletions
diff --git a/man/mmkin.Rd b/man/mmkin.Rd
index 44caf8d2..d088e804 100644
--- a/man/mmkin.Rd
+++ b/man/mmkin.Rd
@@ -45,16 +45,17 @@ mmkin(models, datasets,
}
\examples{
\dontrun{
-m_synth_SFO_lin <- mkinmod(parent = list(type = "SFO", to = "M1"),
- M1 = list(type = "SFO", to = "M2"),
- M2 = list(type = "SFO"), use_of_ff = "max")
+m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
+ M1 = mkinsub("SFO", "M2"),
+ M2 = mkinsub("SFO"), use_of_ff = "max")
-m_synth_FOMC_lin <- mkinmod(parent = list(type = "FOMC", to = "M1"),
- M1 = list(type = "SFO", to = "M2"),
- M2 = list(type = "SFO"), use_of_ff = "max")
+m_synth_FOMC_lin <- mkinmod(parent = mkinsub("FOMC", "M1"),
+ M1 = mkinsub("SFO", "M2"),
+ M2 = mkinsub("SFO"), use_of_ff = "max")
models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin)
datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data)
+names(datasets) <- paste("Dataset", 1:3)
time_default <- system.time(fits.0 <- mmkin(models, datasets))
time_1 <- system.time(fits.1 <- mmkin(models, datasets, cores = 1))
@@ -66,9 +67,11 @@ endpoints(fits[["SFO_lin", 2]])
# Plot.mkinfit handles rows or columns of mmkin result objects
plot(fits.0[1, ])
+plot(fits.0[, 1])
# Double brackets to select a single mkinfit object, which will be
# plotted by plot.mkinfit
plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE)
+plot(fits.0[1, 1])
}
}
\keyword{ optimize }
diff --git a/man/plot.mkinfit.Rd b/man/plot.mkinfit.Rd
index 00b2eca5..bc0b85e8 100644
--- a/man/plot.mkinfit.Rd
+++ b/man/plot.mkinfit.Rd
@@ -18,7 +18,7 @@
lty_obs = rep(1, length(obs_vars)),
add = FALSE, legend = !add,
show_residuals = FALSE, maxabs = "auto",
- sep_vars = FALSE, rel.height.middle = 0.9,
+ sep_obs = FALSE, rel.height.middle = 0.9,
lpos = "topright", inset = c(0.05, 0.05), \dots)
}
\arguments{
diff --git a/man/plot.mmkin.Rd b/man/plot.mmkin.Rd
index ffd83d2f..37d7a25a 100644
--- a/man/plot.mmkin.Rd
+++ b/man/plot.mmkin.Rd
@@ -45,9 +45,9 @@
Johannes Ranke
}
\examples{
- # Only use one core not to offend CRAN checks
+ # Only use one core not to offend CRAN checks, use Levenberg-Marquardt for speed
fits <- mmkin(c("FOMC", "HS"), list("FOCUS B" = FOCUS_2006_B, "FOCUS C" = FOCUS_2006_C),
- cores = 1, quiet = TRUE)
+ cores = 1, quiet = TRUE, method.modFit = "Marq")
plot(fits[, "FOCUS C"])
plot(fits["FOMC", ])

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