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authorJohannes Ranke <jranke@uni-bremen.de>2014-04-25 18:43:51 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2014-04-25 18:43:51 +0200
commit59e2c3b5ce470ace53b93ad5e6e7d9acbfe86f21 (patch)
tree5490c341f3883dec43553d338c89f4c9818aba3d /man
parenta2f772990127891f9596b79771832bc23777a89a (diff)
McCall 2,4,5-T dataset, lower bound for transform_rates=FALSE
Diffstat (limited to 'man')
-rw-r--r--man/mccall81_245T_soil_metabolism.Rd35
-rw-r--r--man/mkinfit.Rd1
2 files changed, 36 insertions, 0 deletions
diff --git a/man/mccall81_245T_soil_metabolism.Rd b/man/mccall81_245T_soil_metabolism.Rd
new file mode 100644
index 00000000..2ccc23db
--- /dev/null
+++ b/man/mccall81_245T_soil_metabolism.Rd
@@ -0,0 +1,35 @@
+\name{mccall81_245T_soil_metabolism}
+\Rdversion{1.1}
+\alias{commerce}
+\alias{catlin}
+\alias{fargo}
+\alias{keith}
+\alias{walla_walla}
+\alias{cecil}
+\docType{data}
+\title{
+ Datasets on aerobic soil metabolism of 2,4,5-T in six soils
+}
+\description{
+ Time course of 2,4,5-trichlorophenoxyacetic acid, and the corresponding 2,4,5-trichlorophenol and
+ 2,4,5-trichloroanisole as recovered in diethylether extracts.
+}
+\usage{mccall81_245T_soil_metabolism}
+\format{
+ 6 dataframes containing the following variables.
+ \describe{
+ \item{\code{name}}{the name of the compound observed. Note that T245 is used as an acronym for 2,4,5-T. T245 is
+ a legitimate object name in R, which is necessary for
+ specifying models using \code{\link{mkinmod}}.}
+ \item{\code{time}}{a numeric vector containing sampling times in days after treatment}
+ \item{\code{value}}{a numeric vector containing concentrations in percent of applied radioactivity}
+ }
+}
+\source{
+ McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107
+ \url{http://dx.doi.org/10.1021/jf00103a026}
+}
+\examples{
+ commerce
+}
+\keyword{datasets}
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd
index 839580a1..823ceeec 100644
--- a/man/mkinfit.Rd
+++ b/man/mkinfit.Rd
@@ -110,6 +110,7 @@ mkinfit(mkinmod, observed,
assumption of normal distribution of the estimator. If TRUE, also
alpha and beta parameters of the FOMC model are log-transformed, as well
as k1 and k2 rate constants for the DFOP and HS models.
+ If TRUE, zero is used as a lower bound for the rates in the optimisation.
}
\item{transform_fractions}{
Boolean specifying if formation fractions constants should be transformed in the

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