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authorJohannes Ranke <jranke@uni-bremen.de>2021-03-19 11:22:07 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-03-19 11:22:07 +0100
commit6d6dc7d53bf99b088af3488588574afc832fb7fe (patch)
tree6dff11a3e87e9e9f5e8cefbd0009acef91a8eb96 /man
parentcb112e53163f9dc63d439dba50ca051877d67a79 (diff)
test_log_parms for plot.mixed.mmkin, roxygen run
Diffstat (limited to 'man')
-rw-r--r--man/mixed.Rd4
-rw-r--r--man/plot.mixed.mmkin.Rd8
-rw-r--r--man/saem.Rd10
3 files changed, 19 insertions, 3 deletions
diff --git a/man/mixed.Rd b/man/mixed.Rd
index 8b00382d..95cae364 100644
--- a/man/mixed.Rd
+++ b/man/mixed.Rd
@@ -23,6 +23,10 @@ mixed(object, ...)
\item{digits}{Number of digits to use for printing.}
}
+\value{
+An object of class 'mixed.mmkin' which has the observed data in a
+single dataframe which is convenient for plotting
+}
\description{
Create a mixed effects model from an mmkin row object
}
diff --git a/man/plot.mixed.mmkin.Rd b/man/plot.mixed.mmkin.Rd
index b1200729..bcab3e74 100644
--- a/man/plot.mixed.mmkin.Rd
+++ b/man/plot.mixed.mmkin.Rd
@@ -13,6 +13,8 @@
xlim = range(x$data$time),
resplot = c("predicted", "time"),
pred_over = NULL,
+ test_log_parms = FALSE,
+ conf.level = 0.6,
ymax = "auto",
maxabs = "auto",
ncol.legend = ifelse(length(i) <= 3, length(i) + 1, ifelse(length(i) <= 8, 3, 4)),
@@ -49,6 +51,12 @@ predicted values?}
\item{pred_over}{Named list of alternative predictions as obtained
from \link{mkinpredict} with a compatible \link{mkinmod}.}
+\item{test_log_parms}{Passed to \link{mean_degparms} in the case of an
+\link{mixed.mmkin} object}
+
+\item{conf.level}{Passed to \link{mean_degparms} in the case of an
+\link{mixed.mmkin} object}
+
\item{ymax}{Vector of maximum y axis values}
\item{maxabs}{Maximum absolute value of the residuals. This is used for the
diff --git a/man/saem.Rd b/man/saem.Rd
index 45f74e44..f462f405 100644
--- a/man/saem.Rd
+++ b/man/saem.Rd
@@ -17,8 +17,9 @@ saem(object, ...)
test_log_parms = FALSE,
conf.level = 0.6,
solution_type = "auto",
- control = list(displayProgress = FALSE, print = FALSE, save = FALSE, save.graphs =
- FALSE),
+ nbiter.saemix = c(300, 100),
+ control = list(displayProgress = FALSE, print = FALSE, nbiter.saemix = nbiter.saemix,
+ save = FALSE, save.graphs = FALSE),
fail_with_errors = TRUE,
verbose = FALSE,
quiet = FALSE,
@@ -65,7 +66,10 @@ for parameter that are tested if requested by 'test_log_parms'.}
\item{solution_type}{Possibility to specify the solution type in case the
automatic choice is not desired}
-\item{control}{Passed to \link[saemix:saemix]{saemix::saemix}}
+\item{nbiter.saemix}{Convenience option to increase the number of
+iterations}
+
+\item{control}{Passed to \link[saemix:saemix]{saemix::saemix}.}
\item{fail_with_errors}{Should a failure to compute standard errors
from the inverse of the Fisher Information Matrix be a failure?}

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