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authorJohannes Ranke <jranke@uni-bremen.de>2016-03-23 17:03:09 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2016-03-23 18:00:06 +0100
commit7875935fdfc3c55e0ef328b3c3a4512a30011df1 (patch)
treecb0c1596d34d4db08271890ac922f026a53206cf /man
parentc9667fbfd5a8c9601ac0c977776b12fe7d9b19dd (diff)
Added 'from_max_mean' to 'mkinfit'.
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
Diffstat (limited to 'man')
-rw-r--r--man/mkinfit.Rd8
1 files changed, 8 insertions, 0 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd
index a75d23ac..e4041755 100644
--- a/man/mkinfit.Rd
+++ b/man/mkinfit.Rd
@@ -21,6 +21,7 @@ mkinfit(mkinmod, observed,
parms.ini = "auto",
state.ini = "auto",
fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1],
+ from_max_mean = FALSE,
solution_type = c("auto", "analytical", "eigen", "deSolve"),
method.ode = "lsoda",
use_compiled = "auto",
@@ -85,6 +86,13 @@ mkinfit(mkinmod, observed,
be excluded from the optimisation. Defaults to all state variables except
for the first one.
}
+ \item{from_max_mean}{
+ If this is set to TRUE, and the model has only one observed variable, then
+ data before the time of the maximum observed value (after averaging for each
+ sampling time) are discarded, and this time is subtracted from all
+ remaining time values, so the time of the maximum observed mean value is
+ the new time zero.
+ }
\item{solution_type}{
If set to "eigen", the solution of the system of differential equations is
based on the spectral decomposition of the coefficient matrix in cases that

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