Add nlmixr tests, reorganize, test intervals()

1 files changed, 22 insertions, 19 deletions

diff --git a/test.log b/test.log
index e6ab6d6d..5a9e0034 100644
--- a/test.log
+++ b/test.log
@@ -7,38 +7,41 @@ Loading required package: parallel
 ✔ |         5 | Calculation of Akaike weights
 ✔ |         2 | Export dataset for reading into CAKE
 ✔ |        12 | Confidence intervals and p-values [1.0s]
-✔ |        14 | Error model fitting [4.8s]
+⠋ |         1 | Dimethenamid data from 2018, parent fits                        
+✔ |        24 | Dimethenamid data from 2018, parent fits [36.7s]
+✔ |        14 | Error model fitting [6.8s]
 ✔ |         5 | Time step normalisation
-✔ |         4 | Calculation of FOCUS chi2 error levels [0.6s]
-✔ |        14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
-✔ |         4 | Test fitting the decline of metabolites from their maximum [0.4s]
-✔ |         1 | Fitting the logistic model [0.2s]
-✔ |     1  35 | Nonlinear mixed-effects models [26.8s]
+✔ |         4 | Calculation of FOCUS chi2 error levels [0.8s]
+✔ |        14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.1s]
+✔ |         4 | Test fitting the decline of metabolites from their maximum [0.5s]
+✔ |         1 | Fitting the logistic model [0.3s]
+✔ |     1  12 | Nonlinear mixed-effects models [0.2s]
 ────────────────────────────────────────────────────────────────────────────────
-Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits
+Skip (test_mixed.R:67:3): saemix results are reproducible for biphasic fits
 Reason: Fitting with saemix takes around 10 minutes when using deSolve
 ────────────────────────────────────────────────────────────────────────────────
 ✔ |         2 | Test dataset classes mkinds and mkindsg
-✔ |        10 | Special cases of mkinfit calls [0.4s]
-✔ |         1 | mkinfit features [0.3s]
+✔ |        10 | Special cases of mkinfit calls [0.6s]
+✔ |         1 | mkinfit features [0.5s]
 ✔ |         8 | mkinmod model generation and printing [0.2s]
-✔ |         3 | Model predictions with mkinpredict [0.4s]
-✔ |        16 | Evaluations according to 2015 NAFTA guidance [1.5s]
-✔ |         9 | Nonlinear mixed-effects models with nlme [8.3s]
-✔ |        16 | Plotting [1.3s]
+✔ |         3 | Model predictions with mkinpredict [0.3s]
+✔ |        16 | Evaluations according to 2015 NAFTA guidance [2.1s]
+✔ |         9 | Nonlinear mixed-effects models with nlme [9.4s]
+✔ |        16 | Plotting [1.5s]
 ✔ |         4 | Residuals extracted from mkinfit models
-✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
-✔ |         7 | Fitting the SFORB model [3.9s]
+✔ |        23 | saemix_parent [29.2s]
+✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.7s]
+✔ |         7 | Fitting the SFORB model [4.4s]
 ✔ |         1 | Summaries of old mkinfit objects
 ✔ |         4 | Summary [0.1s]
-✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s]
-✔ |         9 | Hypothesis tests [8.6s]
+✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.5s]
+✔ |         9 | Hypothesis tests [9.5s]
 ✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 69.5 s
+Duration: 115.5 s
 
 ── Skipped tests  ──────────────────────────────────────────────────────────────
 • Fitting with saemix takes around 10 minutes when using deSolve (1)
 
-[ FAIL 0 | WARN 0 | SKIP 1 | PASS 206 ]
+[ FAIL 0 | WARN 0 | SKIP 1 | PASS 230 ]