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authorJohannes Ranke <jranke@uni-bremen.de>2019-10-28 13:23:40 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2019-10-28 13:23:40 +0100
commitbd761d879a95872f82e6d8f893634a61e122a938 (patch)
tree0b66fa5064eb5bd9e0014de18f433c2692fcbc00 /test.log
parent6e5630a0df7e857697ff2ce4730a5f7f45b67377 (diff)
Fix the cutoff for likelihood based intervals
The cutoff now matches what is given by Venzon and Moolgavkar (1988). Also, confidence intervals closely match intervals obtained with stats4::confint in the test case where an stats4::mle object is created from the likelihood function in one test case. Static documentation rebuilt by pkgdown
Diffstat (limited to 'test.log')
-rw-r--r--test.log16
1 files changed, 8 insertions, 8 deletions
diff --git a/test.log b/test.log
index bc3b3c8c..da9af79e 100644
--- a/test.log
+++ b/test.log
@@ -2,10 +2,10 @@ Loading mkin
Testing mkin
✔ | OK F W S | Context
✔ | 2 | Export dataset for reading into CAKE
-✔ | 9 | Confidence intervals and p-values [2.3 s]
-✔ | 10 | Error model fitting [37.2 s]
+✔ | 10 | Confidence intervals and p-values [12.8 s]
+✔ | 10 | Error model fitting [37.1 s]
✔ | 5 | Calculation of FOCUS chi2 error levels [3.5 s]
-✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.3 s]
+✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.4 s]
✔ | 6 | Test fitting the decline of metabolites from their maximum [0.9 s]
✔ | 1 | Fitting the logistic model [0.9 s]
✔ | 1 | Test dataset class mkinds used in gmkin
@@ -13,19 +13,19 @@ Testing mkin
✔ | 9 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.3 s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.0 s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]
✔ | 3 | Summary
✔ | 11 | Plotting [0.6 s]
✔ | 3 | AIC calculation
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.2 s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.3 s]
✔ | 4 | Fitting the SFORB model [1.7 s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.0 s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.2 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 72.1 s
+Duration: 84.5 s
-OK: 119
+OK: 120
Failed: 0
Warnings: 0
Skipped: 0

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