Improve tests

- Reduce significant digits for the objective function output in
mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my
system
- Add makefile target 'devtest' for testing with R-devel, in order
to fix problems showing up with R-devel on Travis

1 files changed, 36 insertions, 0 deletions

diff --git a/test_dev.log b/test_dev.log
new file mode 100644
index 00000000..b68a7e56
--- /dev/null
+++ b/test_dev.log
@@ -0,0 +1,36 @@
+Loading mkin
+Testing mkin
+✔ |  OK F W S | Context
+
⠏ |   0       | AIC calculation
✔ |   4       | AIC calculation
+
⠏ |   0       | Export dataset for reading into CAKE
✔ |   2       | Export dataset for reading into CAKE
+
⠏ |   0       | Results for FOCUS D established in expertise for UBA (Ranke 2014)
⠋ |   1       | Results for FOCUS D established in expertise for UBA (Ranke 2014)
⠹ |   3       | Results for FOCUS D established in expertise for UBA (Ranke 2014)
⠏ |  10       | Results for FOCUS D established in expertise for UBA (Ranke 2014)
✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s]
+
⠏ |   0       | Calculation of FOCUS chi2 error levels
⠙ |   2       | Calculation of FOCUS chi2 error levels
⠸ |   4       | Calculation of FOCUS chi2 error levels
✔ |   4       | Calculation of FOCUS chi2 error levels [0.4 s]
+
⠏ |   0       | Fitting the SFORB model
⠋ |   1       | Fitting the SFORB model
⠼ |   5       | Fitting the SFORB model
✔ |   7       | Fitting the SFORB model [3.0 s]
+
⠏ |   0       | Analytical solutions for coupled models
⠋ |   1       | Analytical solutions for coupled models
⠙ |   2       | Analytical solutions for coupled models
⠹ |   3       | Analytical solutions for coupled models
⠸ |   4       | Analytical solutions for coupled models
⠼ |   5       | Analytical solutions for coupled models
✔ |   5       | Analytical solutions for coupled models [2.9 s]
+
⠏ |   0       | Calculation of Akaike weights
✔ |   5       | Calculation of Akaike weights
+
⠏ |   0       | Confidence intervals and p-values
⠙ |   2       | Confidence intervals and p-values
⠏ |  10       | Confidence intervals and p-values
✔ |  10       | Confidence intervals and p-values [0.9 s]
+
⠏ |   0       | Error model fitting
⠹ |   3       | Error model fitting
⠸ |   4       | Error model fitting
⠼ |   5       | Error model fitting
⠴ |   6       | Error model fitting
⠧ |   8       | Error model fitting
⠏ |  10       | Error model fitting
⠙ |  12       | Error model fitting
⠸ |  13   1   | Error model fitting
⠸ |  13   1   | Error model fitting
⠸ |  13   1   | Error model fitting
⠸ |  13   1   | Error model fitting
⠸ |  14       | Error model fitting
✔ |  14       | Error model fitting [3.7 s]
+
⠏ |   0       | Test fitting the decline of metabolites from their maximum
⠹ |   3       | Test fitting the decline of metabolites from their maximum
⠸ |   4       | Test fitting the decline of metabolites from their maximum
✔ |   4       | Test fitting the decline of metabolites from their maximum [0.2 s]
+
⠏ |   0       | Fitting the logistic model
⠋ |   1       | Fitting the logistic model
✔ |   1       | Fitting the logistic model [0.2 s]
+
⠏ |   0       | Test dataset class mkinds used in gmkin
✔ |   1       | Test dataset class mkinds used in gmkin
+
⠏ |   0       | Special cases of mkinfit calls
⠇ |   9       | Special cases of mkinfit calls
⠏ |  10       | Special cases of mkinfit calls
⠋ |  11       | Special cases of mkinfit calls
⠙ |  12       | Special cases of mkinfit calls
✔ |  12       | Special cases of mkinfit calls [0.6 s]
+
⠏ |   0       | mkinmod model generation and printing
⠧ |   8       | mkinmod model generation and printing
✔ |   8       | mkinmod model generation and printing [0.2 s]
+
⠏ |   0       | Model predictions with mkinpredict
⠋ |   1       | Model predictions with mkinpredict
✔ |   3       | Model predictions with mkinpredict [0.3 s]
+
⠏ |   0       | Evaluations according to 2015 NAFTA guidance
⠙ |   2       | Evaluations according to 2015 NAFTA guidance
⠇ |   9       | Evaluations according to 2015 NAFTA guidance
⠏ |  10       | Evaluations according to 2015 NAFTA guidance
⠴ |  16       | Evaluations according to 2015 NAFTA guidance
✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.4 s]
+
⠏ |   0       | Nonlinear mixed-effects models
⠋ |   1       | Nonlinear mixed-effects models
⠙ |   2       | Nonlinear mixed-effects models
⠸ |   4       | Nonlinear mixed-effects models
⠼ |   5       | Nonlinear mixed-effects models
⠴ |   6       | Nonlinear mixed-effects models
⠧ |   8       | Nonlinear mixed-effects models
⠇ |   9       | Nonlinear mixed-effects models
✔ |   9       | Nonlinear mixed-effects models [7.0 s]
+
⠏ |   0       | Plotting
⠋ |   1       | Plotting
⠸ |   4       | Plotting
⠦ |   7       | Plotting
⠇ |   9       | Plotting
⠙ |  12       | Plotting
✔ |  14       | Plotting [1.3 s]
+
⠏ |   0       | Residuals extracted from mkinfit models
✔ |   4       | Residuals extracted from mkinfit models
+
⠏ |   0       | Complex test case from Schaefer et al. (2007) Piacenza paper
⠋ |   1       | Complex test case from Schaefer et al. (2007) Piacenza paper
✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.3 s]
+
⠏ |   0       | Summary
✔ |   4       | Summary
+
⠏ |   0       | Summaries of old mkinfit objects
✔ |   1       | Summaries of old mkinfit objects
+
⠏ |   0       | Results for synthetic data established in expertise for UBA (Ranke 2014)
⠋ |   1       | Results for synthetic data established in expertise for UBA (Ranke 2014)
⠹ |   3       | Results for synthetic data established in expertise for UBA (Ranke 2014)
✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.0 s]
+
⠏ |   0       | Hypothesis tests
⠼ |   5       | Hypothesis tests
⠴ |   6       | Hypothesis tests
⠧ |   8       | Hypothesis tests
⠇ |   9       | Hypothesis tests
✔ |   9       | Hypothesis tests [7.1 s]
+
⠏ |   0       | Calculation of maximum time weighted average concentrations (TWAs)
⠋ |   1       | Calculation of maximum time weighted average concentrations (TWAs)
⠙ |   2       | Calculation of maximum time weighted average concentrations (TWAs)
⠹ |   3       | Calculation of maximum time weighted average concentrations (TWAs)
⠸ |   4       | Calculation of maximum time weighted average concentrations (TWAs)
✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]
+
+══ Results ═════════════════════════════════════════════════════════════════════
+Duration: 35.7 s
+
+OK:       161
+Failed:   0
+Warnings: 0
+Skipped:  0