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authorJohannes Ranke <jranke@uni-bremen.de>2019-04-10 10:17:35 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2019-04-10 10:17:35 +0200
commit194659fcaccdd1ee37851725b8c72e99daa3a8cf (patch)
treeedbbebe8956000b9eb725ca425b91e051571ec02 /tests/testthat/DFOP_FOCUS_C_messages.txt
parent5814be02f286ce96d6cff8d698aea6844e4025f1 (diff)
Adapt tests, vignettes and examples
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
Diffstat (limited to 'tests/testthat/DFOP_FOCUS_C_messages.txt')
-rw-r--r--tests/testthat/DFOP_FOCUS_C_messages.txt444
1 files changed, 292 insertions, 152 deletions
diff --git a/tests/testthat/DFOP_FOCUS_C_messages.txt b/tests/testthat/DFOP_FOCUS_C_messages.txt
index 7abde0b6..5327b3f6 100644
--- a/tests/testthat/DFOP_FOCUS_C_messages.txt
+++ b/tests/testthat/DFOP_FOCUS_C_messages.txt
@@ -1,148 +1,148 @@
-parent_0 log_k1 log_k2 g_ilr
+parent_0 log_k1 log_k2 g_ilr sigma
85.1 -2.302585 -4.60517 0
-Model cost at call 1 : 7391.39
+Negative log-likelihood at call 1: 7391.39
85.1 -2.302585 -4.60517 0
85.1 -2.302585 -4.60517 0
-Model cost at call 3 : 7391.389
+Negative log-likelihood at call 3: 7391.389
85.1 -2.302585 -4.60517 0
-Model cost at call 4 : 7391.389
+Negative log-likelihood at call 4: 7391.389
85.1 -2.302585 -4.60517 1.490116e-08
85.06371 -1.77328 -4.250366 0.7698268
-Model cost at call 6 : 2000.127
+Negative log-likelihood at call 6: 2000.127
85.06375 -1.77328 -4.250366 0.7698268
85.06371 -1.773322 -4.250366 0.7698268
85.06371 -1.77328 -4.250408 0.7698268
85.06371 -1.77328 -4.250366 0.7697847
85.03542 -0.9608523 -4.11546 1.336361
-Model cost at call 11 : 32.97798
+Negative log-likelihood at call 11: 32.97798
85.03542 -0.9608523 -4.11546 1.336361
85.03542 -0.9608526 -4.11546 1.336361
85.03542 -0.9608523 -4.11546 1.336361
85.03542 -0.9608523 -4.11546 1.336361
85.03704 -0.256064 -4.273512 0.6447755
85.03285 -0.7822828 -4.127513 1.312494
-Model cost at call 17 : 5.348133
+Negative log-likelihood at call 17: 5.348133
85.03286 -0.7822828 -4.127513 1.312494
-Model cost at call 18 : 5.348132
+Negative log-likelihood at call 18: 5.348132
85.03285 -0.7822828 -4.127513 1.312494
-Model cost at call 19 : 5.348131
+Negative log-likelihood at call 19: 5.348131
85.03285 -0.7822828 -4.127513 1.312494
85.03285 -0.7822828 -4.127513 1.312494
-Model cost at call 21 : 5.348131
+Negative log-likelihood at call 21: 5.348131
85.02325 -0.74968 -4.059 1.14891
85.03127 -0.7909068 -4.114802 1.268157
-Model cost at call 23 : 4.704445
+Negative log-likelihood at call 23: 4.704445
85.03127 -0.7909068 -4.114802 1.268157
-Model cost at call 24 : 4.704444
+Negative log-likelihood at call 24: 4.704444
85.03127 -0.7909068 -4.114802 1.268157
85.03127 -0.7909068 -4.1148 1.268157
-Model cost at call 26 : 4.704433
+Negative log-likelihood at call 26: 4.704433
85.03127 -0.7909068 -4.114802 1.268158
85.03001 -0.7801506 -4.069435 1.262797
-Model cost at call 28 : 4.421625
+Negative log-likelihood at call 28: 4.421625
85.03001 -0.7801506 -4.069435 1.262797
85.03001 -0.7801507 -4.069435 1.262797
-Model cost at call 30 : 4.421624
+Negative log-likelihood at call 30: 4.421624
85.03001 -0.7801506 -4.069435 1.262797
85.03001 -0.7801506 -4.069435 1.262797
85.02878 -0.7900844 -4.023945 1.256918
85.02964 -0.7857352 -4.054587 1.260236
-Model cost at call 34 : 4.414346
+Negative log-likelihood at call 34: 4.414346
85.02964 -0.7857352 -4.054587 1.260236
85.02964 -0.7857351 -4.054587 1.260236
-Model cost at call 36 : 4.414346
+Negative log-likelihood at call 36: 4.414346
85.02964 -0.7857352 -4.054588 1.260236
85.02964 -0.7857352 -4.054587 1.260236
85.02812 -0.7778128 -4.042219 1.25389
-Model cost at call 39 : 4.372463
+Negative log-likelihood at call 39: 4.372463
85.02812 -0.7778128 -4.042219 1.25389
85.02812 -0.7778129 -4.042219 1.25389
-Model cost at call 41 : 4.372462
+Negative log-likelihood at call 41: 4.372462
85.02812 -0.7778128 -4.042219 1.25389
85.02812 -0.7778128 -4.042219 1.25389
85.02419 -0.7765144 -4.02942 1.245094
85.0263 -0.7778419 -4.036021 1.249634
-Model cost at call 45 : 4.369313
+Negative log-likelihood at call 45: 4.369313
85.0263 -0.7778419 -4.036021 1.249634
85.0263 -0.7778418 -4.036021 1.249634
-Model cost at call 47 : 4.369313
+Negative log-likelihood at call 47: 4.369313
85.0263 -0.7778419 -4.036022 1.249634
85.0263 -0.7778419 -4.036021 1.249634
-Model cost at call 49 : 4.369313
+Negative log-likelihood at call 49: 4.369313
85.02267 -0.7786811 -4.02967 1.252015
-Model cost at call 50 : 4.365062
+Negative log-likelihood at call 50: 4.365062
85.02268 -0.7786811 -4.02967 1.252015
85.02267 -0.7786812 -4.02967 1.252015
85.02267 -0.7786811 -4.02967 1.252015
-Model cost at call 53 : 4.365062
+Negative log-likelihood at call 53: 4.365062
85.02267 -0.7786811 -4.02967 1.252015
85.01633 -0.7763163 -4.027611 1.248897
-Model cost at call 55 : 4.364078
+Negative log-likelihood at call 55: 4.364078
85.01633 -0.7763163 -4.027611 1.248897
-Model cost at call 56 : 4.364078
+Negative log-likelihood at call 56: 4.364078
85.01633 -0.7763164 -4.027611 1.248897
-Model cost at call 57 : 4.364077
+Negative log-likelihood at call 57: 4.364077
85.01633 -0.7763163 -4.027611 1.248897
85.01633 -0.7763163 -4.027611 1.248897
85.00894 -0.7777917 -4.026307 1.24772
-Model cost at call 60 : 4.364052
+Negative log-likelihood at call 60: 4.364052
85.00894 -0.7777917 -4.026307 1.24772
-Model cost at call 61 : 4.364052
+Negative log-likelihood at call 61: 4.364052
85.00894 -0.7777917 -4.026307 1.24772
-Model cost at call 62 : 4.364052
+Negative log-likelihood at call 62: 4.364052
85.00894 -0.7777917 -4.026307 1.24772
85.00894 -0.7777917 -4.026307 1.24772
-Model cost at call 64 : 4.364052
+Negative log-likelihood at call 64: 4.364052
85.00518 -0.7773082 -4.026004 1.248453
-Model cost at call 65 : 4.362751
+Negative log-likelihood at call 65: 4.362751
85.00519 -0.7773082 -4.026004 1.248453
85.00518 -0.7773083 -4.026004 1.248453
-Model cost at call 67 : 4.362751
+Negative log-likelihood at call 67: 4.362751
85.00518 -0.7773082 -4.026005 1.248453
85.00518 -0.7773082 -4.026004 1.248453
85.00134 -0.7776046 -4.025878 1.248775
-Model cost at call 70 : 4.362721
+Negative log-likelihood at call 70: 4.362721
85.00135 -0.7776046 -4.025878 1.248775
-Model cost at call 71 : 4.362721
+Negative log-likelihood at call 71: 4.362721
85.00134 -0.7776046 -4.025878 1.248775
-Model cost at call 72 : 4.362721
+Negative log-likelihood at call 72: 4.362721
85.00134 -0.7776046 -4.025878 1.248775
85.00134 -0.7776046 -4.025878 1.248775
85.0032 -0.7774734 -4.0257 1.248643
-Model cost at call 75 : 4.362715
+Negative log-likelihood at call 75: 4.362715
85.0032 -0.7774734 -4.0257 1.248643
85.0032 -0.7774734 -4.0257 1.248643
-Model cost at call 77 : 4.362715
+Negative log-likelihood at call 77: 4.362715
85.0032 -0.7774735 -4.0257 1.248643
85.0032 -0.7774734 -4.0257 1.248643
85.0032 -0.7774734 -4.0257 1.248643
85.0032 -0.7774734 -4.0257 1.248643
85.00249 -0.7774909 -4.025911 1.248679
-Model cost at call 82 : 4.362715
+Negative log-likelihood at call 82: 4.362715
85.0025 -0.7774909 -4.025911 1.248679
-Model cost at call 83 : 4.362715
+Negative log-likelihood at call 83: 4.362715
85.00249 -0.7774909 -4.025911 1.248679
85.00249 -0.7774905 -4.025911 1.248679
85.00249 -0.7774914 -4.025911 1.248679
-Model cost at call 86 : 4.362715
+Negative log-likelihood at call 86: 4.362715
85.00249 -0.7774909 -4.025911 1.248679
85.00249 -0.7774909 -4.025911 1.248679
85.00249 -0.7774909 -4.025911 1.248679
85.00249 -0.7774909 -4.025911 1.248679
85.00274 -0.7774922 -4.025821 1.248672
-Model cost at call 91 : 4.362714
+Negative log-likelihood at call 91: 4.362714
85.00274 -0.7774922 -4.025821 1.248672
85.00274 -0.7774922 -4.025821 1.248672
-Model cost at call 93 : 4.362714
+Negative log-likelihood at call 93: 4.362714
85.00274 -0.7774921 -4.025821 1.248672
-Model cost at call 94 : 4.362714
+Negative log-likelihood at call 94: 4.362714
85.00274 -0.7774922 -4.025821 1.248672
85.00274 -0.7774922 -4.025821 1.248672
85.00274 -0.7774922 -4.025821 1.248672
85.00274 -0.7774922 -4.025821 1.248672
85.00274 -0.7774922 -4.025821 1.248672
85.00273 -0.7774912 -4.025817 1.24867
-Model cost at call 100 : 4.362714
+Negative log-likelihood at call 100: 4.362714
85.00275 -0.7774912 -4.025817 1.24867
85.00271 -0.7774912 -4.025817 1.24867
85.00273 -0.7774905 -4.025817 1.24867
@@ -152,7 +152,7 @@ Model cost at call 100 : 4.362714
85.00273 -0.7774912 -4.025817 1.248671
85.00273 -0.7774912 -4.025817 1.248669
85.00274 -0.7774913 -4.025819 1.248671
-Model cost at call 109 : 4.362714
+Negative log-likelihood at call 109: 4.362714
85.00276 -0.7774913 -4.025819 1.248671
85.00272 -0.7774913 -4.025819 1.248671
85.00274 -0.7774904 -4.025819 1.248671
@@ -162,109 +162,249 @@ Model cost at call 109 : 4.362714
85.00274 -0.7774913 -4.025819 1.248672
85.00274 -0.7774913 -4.025819 1.248669
85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-Model cost at call 123 : 4.362714
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-IRLS based on variance estimates according to the two component error model
-Initial variance components are:
-sigma_low rsd_high
- 1.08984 0.00000
-85.00274 -0.7774913 -4.025819 1.248671
-Model cost at call 129 : 3.673061
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-Model cost at call 132 : 3.673061
-85.00274 -0.7774913 -4.025819 1.248671
-85.00273 -0.7775309 -4.025818 1.24866
-85.00274 -0.7774953 -4.025819 1.24867
-85.00274 -0.7774917 -4.025819 1.248671
-85.00274 -0.7774914 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-Model cost at call 138 : 3.673061
-85.00277 -0.7774913 -4.025819 1.248671
-85.0027 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774744 -4.025819 1.248671
-85.00274 -0.7775083 -4.025819 1.248671
-85.00274 -0.7774913 -4.025779 1.248671
-85.00274 -0.7774913 -4.025858 1.248671
-85.00274 -0.7774913 -4.025819 1.248702
-85.00274 -0.7774913 -4.025819 1.248639
-85.00274 -0.7774913 -4.025819 1.248671
-Model cost at call 147 : 3.673061
-85.00276 -0.7774913 -4.025819 1.248671
-85.00271 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774906 -4.025819 1.248671
-85.00274 -0.7774921 -4.025819 1.248671
-85.00274 -0.7774913 -4.025812 1.248671
-85.00274 -0.7774913 -4.025825 1.248671
-85.00274 -0.7774913 -4.025819 1.248672
-85.00274 -0.7774913 -4.025819 1.248669
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-Model cost at call 159 : 3.673061
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-Iteration 1 yields variance estimates:
-sigma_low rsd_high
-0.7434091 0.0000000
-Sum of squared differences to last variance (component) estimates: 0.12
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00273 -0.7775366 -4.025821 1.248652
-85.00274 -0.7774959 -4.025819 1.248669
-85.00274 -0.7774918 -4.025819 1.24867
-85.00274 -0.7774914 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00279 -0.7774913 -4.025819 1.248671
-85.00268 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774621 -4.025819 1.248671
-85.00274 -0.7775206 -4.025819 1.248671
-85.00274 -0.7774913 -4.025761 1.248671
-85.00274 -0.7774913 -4.025876 1.248671
-85.00274 -0.7774913 -4.025819 1.248714
-85.00274 -0.7774913 -4.025819 1.248627
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00273 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774908 -4.025819 1.248671
-85.00274 -0.7774919 -4.025819 1.248671
-85.00274 -0.7774913 -4.025816 1.248671
-85.00274 -0.7774913 -4.025822 1.248671
-85.00274 -0.7774913 -4.025819 1.248672
-85.00274 -0.7774913 -4.025819 1.24867
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-85.00274 -0.7774913 -4.025819 1.248671
-Iteration 2 yields variance estimates:
-sigma_low rsd_high
-0.7434091 0.0000000
-Sum of squared differences to last variance (component) estimates: 2.9e-16
-Optimisation by method Port successfully terminated.
+85.00274 -0.7774913 -4.025819 1.248671 0.696237
+85.00274 -0.7774913 -4.025819 1.248671 0.696237
+85.00274 -0.7774913 -4.025819 1.248671 0.696237
+93.50301 -0.7774913 -4.025819 1.248671 0.696237
+76.50246 -0.7774913 -4.025819 1.248671 0.696237
+89.25287 -0.7774913 -4.025819 1.248671 0.696237
+80.7526 -0.7774913 -4.025819 1.248671 0.696237
+87.12781 -0.7774913 -4.025819 1.248671 0.696237
+82.87767 -0.7774913 -4.025819 1.248671 0.696237
+86.06527 -0.7774913 -4.025819 1.248671 0.696237
+83.9402 -0.7774913 -4.025819 1.248671 0.696237
+85.00274 -0.6997422 -4.025819 1.248671 0.696237
+85.00274 -0.8552405 -4.025819 1.248671 0.696237
+85.00274 -0.7386168 -4.025819 1.248671 0.696237
+85.00274 -0.8163659 -4.025819 1.248671 0.696237
+85.00274 -0.758054 -4.025819 1.248671 0.696237
+85.00274 -0.7969286 -4.025819 1.248671 0.696237
+85.00274 -0.7677727 -4.025819 1.248671 0.696237
+85.00274 -0.78721 -4.025819 1.248671 0.696237
+85.00274 -0.7774913 -3.623237 1.248671 0.696237
+85.00274 -0.7774913 -4.428401 1.248671 0.696237
+85.00274 -0.7774913 -3.824528 1.248671 0.696237
+85.00274 -0.7774913 -4.22711 1.248671 0.696237
+85.00274 -0.7774913 -3.925173 1.248671 0.696237
+85.00274 -0.7774913 -4.126464 1.248671 0.696237
+85.00274 -0.7774913 -3.975496 1.248671 0.696237
+85.00274 -0.7774913 -4.076142 1.248671 0.696237
+85.00274 -0.7774913 -4.025819 1.373538 0.696237
+85.00274 -0.7774913 -4.025819 1.123804 0.696237
+85.00274 -0.7774913 -4.025819 1.311104 0.696237
+85.00274 -0.7774913 -4.025819 1.186237 0.696237
+85.00274 -0.7774913 -4.025819 1.279887 0.696237
+85.00274 -0.7774913 -4.025819 1.217454 0.696237
+85.00274 -0.7774913 -4.025819 1.264279 0.696237
+85.00274 -0.7774913 -4.025819 1.233062 0.696237
+85.00274 -0.7774913 -4.025819 1.248671 0.7658608
+85.00274 -0.7774913 -4.025819 1.248671 0.6266133
+85.00274 -0.7774913 -4.025819 1.248671 0.7310489
+85.00274 -0.7774913 -4.025819 1.248671 0.6614252
+85.00274 -0.7774913 -4.025819 1.248671 0.713643
+85.00274 -0.7774913 -4.025819 1.248671 0.6788311
+85.00274 -0.7774913 -4.025819 1.248671 0.70494
+85.00274 -0.7774913 -4.025819 1.248671 0.6875341
+93.50301 -0.6997422 -4.025819 1.248671 0.696237
+76.50246 -0.8552405 -4.025819 1.248671 0.696237
+89.25287 -0.7386168 -4.025819 1.248671 0.696237
+80.7526 -0.8163659 -4.025819 1.248671 0.696237
+87.12781 -0.758054 -4.025819 1.248671 0.696237
+82.87767 -0.7969286 -4.025819 1.248671 0.696237
+86.06527 -0.7677727 -4.025819 1.248671 0.696237
+83.9402 -0.78721 -4.025819 1.248671 0.696237
+93.50301 -0.7774913 -3.623237 1.248671 0.696237
+76.50246 -0.7774913 -4.428401 1.248671 0.696237
+89.25287 -0.7774913 -3.824528 1.248671 0.696237
+80.7526 -0.7774913 -4.22711 1.248671 0.696237
+87.12781 -0.7774913 -3.925173 1.248671 0.696237
+82.87767 -0.7774913 -4.126464 1.248671 0.696237
+86.06527 -0.7774913 -3.975496 1.248671 0.696237
+83.9402 -0.7774913 -4.076142 1.248671 0.696237
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