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authorJohannes Ranke <jranke@uni-bremen.de>2022-11-18 19:14:47 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-11-18 19:14:47 +0100
commit5364f037a72863ef5ba81e14ba4417f68fd389f9 (patch)
treefac84908a74553009b0ab03d7a8c21cdf3a7f086 /tests/testthat/print_dfop_saem_1.txt
parenta14237fc1580b09f8772cd3330b0a445785e48ac (diff)
Make mixed model test data permanent to ensure reproducibility
To ensure that tests on different platforms work on the same data, the mixed modelling test data previosly generated in tests/testthat/setup_script.R were generated once using the script in inst/dataset/generation/ds_mixed.R, and are now distributed with the package.
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diff --git a/tests/testthat/print_dfop_saem_1.txt b/tests/testthat/print_dfop_saem_1.txt
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+Kinetic nonlinear mixed-effects model fit by SAEM
+Structural model:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+ time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+ * parent
+
+Data:
+270 observations of 1 variable(s) grouped in 15 datasets
+
+Likelihood computed by importance sampling
+ AIC BIC logLik
+ 1409 1415 -696
+
+Fitted parameters:
+ estimate lower upper
+parent_0 99.92 98.77 101.06
+log_k1 -2.72 -2.95 -2.50
+log_k2 -4.14 -4.27 -4.01
+g_qlogis -0.35 -0.53 -0.16
+a.1 0.92 0.68 1.16
+b.1 0.05 0.04 0.06
+SD.log_k1 0.37 0.23 0.51
+SD.log_k2 0.23 0.14 0.31

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