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authorJohannes Ranke <jranke@uni-bremen.de>2019-04-10 10:17:35 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2019-04-10 10:17:35 +0200
commit194659fcaccdd1ee37851725b8c72e99daa3a8cf (patch)
treeedbbebe8956000b9eb725ca425b91e051571ec02 /tests/testthat/summary_DFOP_FOCUS_C.txt
parent5814be02f286ce96d6cff8d698aea6844e4025f1 (diff)
Adapt tests, vignettes and examples
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
Diffstat (limited to 'tests/testthat/summary_DFOP_FOCUS_C.txt')
-rw-r--r--tests/testthat/summary_DFOP_FOCUS_C.txt48
1 files changed, 26 insertions, 22 deletions
diff --git a/tests/testthat/summary_DFOP_FOCUS_C.txt b/tests/testthat/summary_DFOP_FOCUS_C.txt
index 33d55ebc..1d669d43 100644
--- a/tests/testthat/summary_DFOP_FOCUS_C.txt
+++ b/tests/testthat/summary_DFOP_FOCUS_C.txt
@@ -10,16 +10,18 @@ d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
Model predictions using solution type analytical
-Fitted with method Port using test 0 model solutions performed in test time 0 s
+Fitted with method using test 0 model solutions performed in test time 0 s
-Weighting: none
+Error model:
+NULL
Starting values for parameters to be optimised:
- value type
-parent_0 85.10 state
-k1 0.10 deparm
-k2 0.01 deparm
-g 0.50 deparm
+ value type
+parent_0 85.100000 state
+k1 0.100000 deparm
+k2 0.010000 deparm
+g 0.500000 deparm
+sigma 0.696237 error
Starting values for the transformed parameters actually optimised:
value lower upper
@@ -27,35 +29,37 @@ parent_0 85.100000 -Inf Inf
log_k1 -2.302585 -Inf Inf
log_k2 -4.605170 -Inf Inf
g_ilr 0.000000 -Inf Inf
+sigma 0.696237 0 Inf
Fixed parameter values:
None
Optimised, transformed parameters with symmetric confidence intervals:
Estimate Std. Error Lower Upper
-parent_0 85.0000 0.89070 82.7100 87.2900
-log_k1 -0.7775 0.04430 -0.8914 -0.6636
-log_k2 -4.0260 0.17030 -4.4640 -3.5880
-g_ilr 1.2490 0.07619 1.0530 1.4450
+parent_0 85.0000 0.66620 83.1500 86.8500
+log_k1 -0.7775 0.03380 -0.8713 -0.6836
+log_k2 -4.0260 0.13100 -4.3890 -3.6620
+g_ilr 1.2490 0.05811 1.0870 1.4100
+sigma 0.6962 0.16410 0.2406 1.1520
Parameter correlation:
- parent_0 log_k1 log_k2 g_ilr
-parent_0 1.00000 0.4338 0.07924 -0.01897
-log_k1 0.43380 1.0000 0.46567 -0.66010
-log_k2 0.07924 0.4657 1.00000 -0.74183
-g_ilr -0.01897 -0.6601 -0.74183 1.00000
-
-Residual standard error: 0.9341 on 5 degrees of freedom
+ parent_0 log_k1 log_k2 g_ilr sigma
+parent_0 1.000e+00 4.393e-01 8.805e-02 -3.176e-02 5.405e-07
+log_k1 4.393e-01 1.000e+00 4.821e-01 -6.716e-01 4.395e-07
+log_k2 8.805e-02 4.821e-01 1.000e+00 -7.532e-01 -1.151e-07
+g_ilr -3.176e-02 -6.716e-01 -7.532e-01 1.000e+00 -2.142e-08
+sigma 5.405e-07 4.395e-07 -1.151e-07 -2.142e-08 1.000e+00
Backtransformed parameters:
Confidence intervals for internally transformed parameters are asymmetric.
t-test (unrealistically) based on the assumption of normal distribution
for estimators of untransformed parameters.
Estimate t value Pr(>t) Lower Upper
-parent_0 85.00000 95.440 1.197e-09 82.71000 87.29000
-k1 0.45960 22.570 1.586e-06 0.41010 0.51500
-k2 0.01785 5.873 1.016e-03 0.01152 0.02765
-g 0.85390 63.540 9.135e-09 0.81590 0.88520
+parent_0 85.00000 127.600 1.131e-08 83.15000 86.85000
+k1 0.45960 29.580 3.887e-06 0.41840 0.50480
+k2 0.01785 7.636 7.901e-04 0.01241 0.02568
+g 0.85390 83.310 6.221e-08 0.82310 0.88020
+sigma 0.69620 4.243 6.618e-03 0.24060 1.15200
Chi2 error levels in percent:
err.min n.optim df

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