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authorJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
commit8d1a84ac2190538ed3bac53a303064e281595868 (patch)
treeacb894d85ab7ec87c4911c355a5264a77e08e34b /tests/testthat/summary_hfit_sfo_tc.txt
parent51d63256a7b3020ee11931d61b4db97b9ded02c0 (diff)
parent4200e566ad2600f56bc3987669aeab88582139eb (diff)
Merge branch 'main' into custom_lsoda_call
Diffstat (limited to 'tests/testthat/summary_hfit_sfo_tc.txt')
-rw-r--r--tests/testthat/summary_hfit_sfo_tc.txt43
1 files changed, 26 insertions, 17 deletions
diff --git a/tests/testthat/summary_hfit_sfo_tc.txt b/tests/testthat/summary_hfit_sfo_tc.txt
index 41743091..0618c715 100644
--- a/tests/testthat/summary_hfit_sfo_tc.txt
+++ b/tests/testthat/summary_hfit_sfo_tc.txt
@@ -8,7 +8,7 @@ Equations:
d_parent/dt = - k_parent * parent
Data:
-106 observations of 1 variable(s) grouped in 6 datasets
+95 observations of 1 variable(s) grouped in 6 datasets
Model predictions using solution type analytical
@@ -17,26 +17,35 @@ Using 300, 100 iterations and 9 chains
Variance model: Two-component variance function
-Mean of starting values for individual parameters:
+Starting values for degradation parameters:
parent_0 log_k_parent
- 101 -3
+ 94 -2
Fixed degradation parameter values:
None
+Starting values for random effects (square root of initial entries in omega):
+ parent_0 log_k_parent
+parent_0 4 0.0
+log_k_parent 0 0.7
+
+Starting values for error model parameters:
+a.1 b.1
+ 1 1
+
Results:
Likelihood computed by importance sampling
AIC BIC logLik
- 533 531 -261
+ 542 541 -266
Optimised parameters:
- est. lower upper
-parent_0 101.02 99.58 102.46
-log_k_parent -3.32 -3.53 -3.11
-a.1 0.91 0.64 1.17
-b.1 0.05 0.04 0.06
-SD.log_k_parent 0.27 0.11 0.42
+ est. lower upper
+parent_0 92.52 89.11 95.9
+log_k_parent -1.66 -2.07 -1.3
+a.1 2.03 1.60 2.5
+b.1 0.09 0.07 0.1
+SD.log_k_parent 0.51 0.22 0.8
Correlation:
pr_0
@@ -44,18 +53,18 @@ log_k_parent 0.1
Random effects:
est. lower upper
-SD.log_k_parent 0.3 0.1 0.4
+SD.log_k_parent 0.5 0.2 0.8
Variance model:
est. lower upper
-a.1 0.91 0.64 1.17
-b.1 0.05 0.04 0.06
+a.1 2.03 1.60 2.5
+b.1 0.09 0.07 0.1
Backtransformed parameters:
- est. lower upper
-parent_0 1e+02 1e+02 1e+02
-k_parent 4e-02 3e-02 4e-02
+ est. lower upper
+parent_0 92.5 89.1 95.9
+k_parent 0.2 0.1 0.3
Estimated disappearance times:
DT50 DT90
-parent 19 64
+parent 4 12

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