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authorJohannes Ranke <jranke@uni-bremen.de>2022-03-02 18:03:54 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-03-02 18:03:54 +0100
commit2bb59c88d49b193f278916ad9cc4de83c0de9604 (patch)
treef286bba254d7c5f2d32eeb2b11f6148938b0e1e1 /tests/testthat/summary_nlmixr_saem_biphasic.txt
parent351248d07f810ccb6c497633a02cd48ee35526e6 (diff)
Make tests more platform independent, update docs
Diffstat (limited to 'tests/testthat/summary_nlmixr_saem_biphasic.txt')
-rw-r--r--tests/testthat/summary_nlmixr_saem_biphasic.txt62
1 files changed, 31 insertions, 31 deletions
diff --git a/tests/testthat/summary_nlmixr_saem_biphasic.txt b/tests/testthat/summary_nlmixr_saem_biphasic.txt
index f1cdc47b..144cbac7 100644
--- a/tests/testthat/summary_nlmixr_saem_biphasic.txt
+++ b/tests/testthat/summary_nlmixr_saem_biphasic.txt
@@ -19,17 +19,17 @@ Degradation model predictions using RxODE
Fitted in test time 0 s
-Variance model: Constant variance
+Variance model: Two-component variance function
Mean of starting values for individual parameters:
parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
- 100.67 -5.38 -0.09 -2.74 -4.51
+ 100.65 -5.38 -0.09 -2.74 -4.53
g_qlogis
- -0.18
+ -0.14
Mean of starting values for error model parameters:
-sigma_parent sigma_m1
- 3 3
+sigma_low_parent rsd_high_parent sigma_low_m1 rsd_high_m1
+ 0.79 0.05 0.79 0.05
Fixed degradation parameter values:
None
@@ -38,33 +38,33 @@ Results:
Likelihood calculated by gauss3_1.6
AIC BIC logLik
- 2510 2569 -1241
+ 2400 2468 -1184
Optimised parameters:
- est. lower upper
-parent_0 100.49 99.6 101.37
-log_k_m1 -5.36 -5.5 -5.20
-f_parent_qlogis -0.09 -0.3 0.08
-log_k1 -2.78 -3.0 -2.59
-log_k2 -4.51 -4.7 -4.35
-g_qlogis -0.12 -0.5 0.21
+ est. lower upper
+parent_0 100.35 99.0 101.7
+log_k_m1 -5.35 -5.5 -5.2
+f_parent_qlogis -0.09 -0.3 0.1
+log_k1 -2.76 -3.0 -2.6
+log_k2 -4.49 -4.6 -4.4
+g_qlogis -0.17 -0.4 0.1
Correlation:
pr_0 l__1 f_p_ lg_1 lg_2
-log_k_m1 -0.3
-f_parent_qlogis -0.2 0.3
-log_k1 0.1 0.1 0.0
-log_k2 0.0 0.3 0.1 0.4
-g_qlogis 0.0 -0.3 -0.1 -0.5 -0.7
+log_k_m1 -0.4
+f_parent_qlogis -0.4 0.4
+log_k1 0.2 -0.2 -0.1
+log_k2 0.0 0.1 0.0 0.3
+g_qlogis 0.1 -0.1 0.0 -0.4 -0.5
Random effects (omega):
eta.parent_0 eta.log_k_m1 eta.f_parent_qlogis eta.log_k1
-eta.parent_0 0.2 0.00 0.00 0.00
-eta.log_k_m1 0.0 0.05 0.00 0.00
-eta.f_parent_qlogis 0.0 0.00 0.09 0.00
-eta.log_k1 0.0 0.00 0.00 0.09
-eta.log_k2 0.0 0.00 0.00 0.00
-eta.g_qlogis 0.0 0.00 0.00 0.00
+eta.parent_0 0.08 0.00 0.0 0.00
+eta.log_k_m1 0.00 0.02 0.0 0.00
+eta.f_parent_qlogis 0.00 0.00 0.1 0.00
+eta.log_k1 0.00 0.00 0.0 0.09
+eta.log_k2 0.00 0.00 0.0 0.00
+eta.g_qlogis 0.00 0.00 0.0 0.00
eta.log_k2 eta.g_qlogis
eta.parent_0 0.00 0.0
eta.log_k_m1 0.00 0.0
@@ -74,17 +74,17 @@ eta.log_k2 0.03 0.0
eta.g_qlogis 0.00 0.1
Variance model:
-sigma_parent sigma_m1
- 4 1
+sigma_low_parent rsd_high_parent sigma_low_m1 rsd_high_m1
+ 1.04 0.05 0.82 0.06
Backtransformed parameters:
est. lower upper
parent_0 1e+02 1e+02 1e+02
k_m1 5e-03 4e-03 6e-03
f_parent_to_m1 5e-01 4e-01 5e-01
-k1 6e-02 5e-02 7e-02
-k2 1e-02 9e-03 1e-02
-g 5e-01 4e-01 6e-01
+k1 6e-02 5e-02 8e-02
+k2 1e-02 1e-02 1e-02
+g 5e-01 4e-01 5e-01
Resulting formation fractions:
ff
@@ -93,5 +93,5 @@ parent_sink 0.5
Estimated disappearance times:
DT50 DT90 DT50back DT50_k1 DT50_k2
-parent 25 152 46 11 63
-m1 147 488 NA NA NA
+parent 25 150 45 11 61
+m1 145 483 NA NA NA

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