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authorJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2023-02-13 05:19:08 +0100
commit8d1a84ac2190538ed3bac53a303064e281595868 (patch)
treeacb894d85ab7ec87c4911c355a5264a77e08e34b /tests/testthat/summary_saem_dfop_sfo_s.txt
parent51d63256a7b3020ee11931d61b4db97b9ded02c0 (diff)
parent4200e566ad2600f56bc3987669aeab88582139eb (diff)
Merge branch 'main' into custom_lsoda_call
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+saemix version used for fitting: Dummy 0.0 for testing
+mkin version used for pre-fitting: Dummy 0.0 for testing
+R version used for fitting: Dummy R version for testing
+Date of fit: Dummy date for testing
+Date of summary: Dummy date for testing
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+ time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+ * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+ * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+ exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+510 observations of 2 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical
+
+Fitted in test time 0 s
+Using 300, 100 iterations and 4 chains
+
+Variance model: Two-component variance function
+
+Starting values for degradation parameters:
+ parent_0 k_m1 f_parent_to_m1 k1 k2
+ 1e+02 7e-03 5e-01 1e-01 2e-02
+ g
+ 5e-01
+
+Fixed degradation parameter values:
+None
+
+Starting values for random effects (square root of initial entries in omega):
+ parent_0 k_m1 f_parent_to_m1 k1 k2 g
+parent_0 101 0 0 0 0 0
+k_m1 0 1 0 0 0 0
+f_parent_to_m1 0 0 1 0 0 0
+k1 0 0 0 1 0 0
+k2 0 0 0 0 1 0
+g 0 0 0 0 0 1
+
+Starting values for error model parameters:
+a.1 b.1
+ 1 1
+
+Results:
+
+Likelihood computed by importance sampling
+ AIC BIC logLik
+ 2334 2344 -1153
+
+Optimised parameters:
+ est. lower upper
+parent_0 1e+02 1e+02 1e+02
+k_m1 7e-03 6e-03 7e-03
+f_parent_to_m1 5e-01 4e-01 5e-01
+k1 1e-01 9e-02 1e-01
+k2 2e-02 2e-02 3e-02
+g 5e-01 5e-01 5e-01
+a.1 9e-01 8e-01 1e+00
+b.1 5e-02 5e-02 6e-02
+SD.parent_0 3e-02 -5e+01 5e+01
+SD.k_m1 2e-01 1e-01 3e-01
+SD.f_parent_to_m1 3e-01 2e-01 4e-01
+SD.k1 4e-01 2e-01 5e-01
+SD.k2 3e-01 2e-01 5e-01
+SD.g 2e-01 6e-02 4e-01
+
+Correlation:
+ pr_0 k_m1 f___ k1 k2
+k_m1 -0.2
+f_parent_to_m1 -0.3 0.1
+k1 0.1 0.0 0.0
+k2 0.0 0.0 0.0 0.1
+g 0.1 -0.1 0.0 -0.2 -0.2
+
+Random effects:
+ est. lower upper
+SD.parent_0 0.03 -49.24 49.3
+SD.k_m1 0.23 0.13 0.3
+SD.f_parent_to_m1 0.30 0.19 0.4
+SD.k1 0.40 0.25 0.5
+SD.k2 0.34 0.21 0.5
+SD.g 0.21 0.06 0.4
+
+Variance model:
+ est. lower upper
+a.1 0.93 0.79 1.06
+b.1 0.05 0.05 0.06
+
+Resulting formation fractions:
+ ff
+parent_m1 0.5
+parent_sink 0.5
+
+Estimated disappearance times:
+ DT50 DT90 DT50back DT50_k1 DT50_k2
+parent 13 73 22 6 32
+m1 105 348 NA NA NA

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