aboutsummaryrefslogtreecommitdiff
path: root/tests/testthat/test_CAKE_export.R
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2019-02-25 19:12:46 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2019-02-25 19:12:46 +0100
commitdd4e62ad803b74667378808aa0249cab6326d05c (patch)
treecd77e18d729a0eb8e31587dc032d284b5b2da79d /tests/testthat/test_CAKE_export.R
parentd2712bbe66b3af861053c58a6b412eebbd9c5623 (diff)
Test CAKE export
Diffstat (limited to 'tests/testthat/test_CAKE_export.R')
-rw-r--r--tests/testthat/test_CAKE_export.R51
1 files changed, 51 insertions, 0 deletions
diff --git a/tests/testthat/test_CAKE_export.R b/tests/testthat/test_CAKE_export.R
new file mode 100644
index 00000000..aeb192c8
--- /dev/null
+++ b/tests/testthat/test_CAKE_export.R
@@ -0,0 +1,51 @@
+# Copyright (C) 2019 Johannes Ranke
+# Contact: jranke@uni-bremen.de
+
+# This file is part of the R package mkin
+
+# mkin is free software: you can redistribute it and/or modify it under the
+# terms of the GNU General Public License as published by the Free Software
+# Foundation, either version 3 of the License, or (at your option) any later
+# version.
+
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
+# details.
+
+# You should have received a copy of the GNU General Public License along with
+# this program. If not, see <http://www.gnu.org/licenses/>
+
+context("Export dataset for reading into CAKE")
+
+test_that("Exporting is reproducible", {
+ CAKE_export(list("FOCUS C" = FOCUS_2006_C,
+ "FOCUS D" = FOCUS_2006_D),
+ map = c(parent = "Parent", m1 = "M1"),
+ filename = "FOCUS_2006_D.csf", overwrite = TRUE,
+ study = "FOCUS 2006 D")
+ csf <- readLines(con = "FOCUS_2006_D.csf")
+ expect_known_output(csf, "FOCUS_2006_D.txt")
+})
+
+test_that("Test data from Appendix D are correctly evaluated", {
+ expect_message(res <- nafta(MRID_555555, "MRID 555555"))
+
+ # From Figure D.1
+ dtx_sop <- matrix(c(407, 541, 429, 1352, 5192066, 2383), nrow = 3, ncol = 2)
+ expect_equivalent(res$distimes[, 1:2], dtx_sop, tolerance = 1,
+ scale = 1)
+
+ C0_sop <- c(SFO = 83.8, IORE = 96.9, DFOP = 97.6)
+ C0_mkin <- sapply(res$parameters, function(x) x["parent_0", "Estimate"])
+ expect_equivalent(C0_mkin, C0_sop, scale = 1, tolerance = 0.1)
+
+ expect_equal(round(res$S_c), 717)
+ expect_equal(signif(res$S[["SFO"]], 3), 1.38e+3)
+ expect_equal(round(res$t_rep), 841)
+
+ expect_known_output(print(res), "print_nafta_analysis.txt")
+
+ plot_nafta <- function() plot(res)
+ vdiffr::expect_doppelganger("Plot NAFTA analysis", plot_nafta)
+})

Contact - Imprint