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authorJohannes Ranke <jranke@uni-bremen.de>2018-09-14 21:02:46 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2018-09-14 21:02:46 +0200
commit587662437bce06ea202551048226b86cff0db187 (patch)
tree01cac9a26ad1d51ba19fe5bcfa15754d46e7bde8 /tests/testthat/test_FOCUS_D_UBA_expertise.R
parent851f146e866817e48a7becf25b7d76f0ad45f1fe (diff)
Skip more tests on CRANv0.9.47.5
Static documentation rebuilt by pkgdown
Diffstat (limited to 'tests/testthat/test_FOCUS_D_UBA_expertise.R')
-rw-r--r--tests/testthat/test_FOCUS_D_UBA_expertise.R70
1 files changed, 30 insertions, 40 deletions
diff --git a/tests/testthat/test_FOCUS_D_UBA_expertise.R b/tests/testthat/test_FOCUS_D_UBA_expertise.R
index 5d5a801a..3b241aa4 100644
--- a/tests/testthat/test_FOCUS_D_UBA_expertise.R
+++ b/tests/testthat/test_FOCUS_D_UBA_expertise.R
@@ -1,4 +1,4 @@
-# Copyright (C) 2015 Johannes Ranke
+# Copyright (C) 2015,2018 Johannes Ranke
# Contact: jranke@uni-bremen.de
# This file is part of the R package mkin
@@ -18,69 +18,59 @@
context("Results for FOCUS D established in expertise for UBA (Ranke 2014)")
-SFO_SFO <- mkinmod(parent = list(type = "SFO", to = "m1"),
- m1 = list(type = "SFO"), quiet = TRUE)
-SFO_SFO.ff <- mkinmod(parent = list(type = "SFO", to = "m1"),
- m1 = list(type = "SFO"),
- use_of_ff = "max", quiet = TRUE)
+# Results are from p. 40
-fit.default <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
-fit.ff <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
+test_that("Fits without formation fractions are correct for FOCUS D", {
+ SFO_SFO <- mkinmod(parent = list(type = "SFO", to = "m1"),
+ m1 = list(type = "SFO"), quiet = TRUE)
+ fit.default <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
-# Results are from p. 40
+ expect_equal(round(as.numeric(endpoints(fit.default)$distimes["parent", ]), 2),
+ c(7.02, 23.33))
+ expect_equal(round(as.numeric(endpoints(fit.default)$distimes["m1", ]), 1),
+ c(131.8, 437.7))
-test_that("Fitted parameters are correct for FOCUS D", {
+ expect_equal(signif(summary(fit.default)$bpar[, "t value"], 5),
+ c(parent_0 = 61.720, k_parent_sink = 12.777, k_parent_m1 = 24.248, k_m1_sink = 7.3486))
+})
+
+test_that("Fits with formation fractions are correct for FOCUS D", {
+ skip_on_cran()
+ SFO_SFO.ff <- mkinmod(parent = list(type = "SFO", to = "m1"),
+ m1 = list(type = "SFO"),
+ use_of_ff = "max", quiet = TRUE)
+
+ fit.ff <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
expect_equivalent(round(fit.ff$bparms.optim, c(2, 4, 4, 4)),
c(99.60, 0.0987, 0.0053, 0.5145))
-})
-test_that("FOCUS chi2 error levels are correct for FOCUS D", {
expect_equivalent(round(100 * mkinerrmin(fit.ff)$err.min, 2),
c(6.40, 6.46, 4.69))
-})
-test_that("DT50/90 are correct for FOCUS D when using formation fractions", {
expect_equal(round(as.numeric(endpoints(fit.ff)$distimes["parent", ]), 2),
c(7.02, 23.33))
expect_equal(round(as.numeric(endpoints(fit.ff)$distimes["m1", ]), 1),
c(131.8, 437.7))
})
-test_that("DT50/90 are correct for FOCUS D when not using formation fractions", {
- expect_equal(round(as.numeric(endpoints(fit.default)$distimes["parent", ]), 2),
- c(7.02, 23.33))
- expect_equal(round(as.numeric(endpoints(fit.default)$distimes["m1", ]), 1),
- c(131.8, 437.7))
-})
-
# References:
# Ranke (2014) Prüfung und Validierung von Modellierungssoftware als Alternative
# zu ModelMaker 4.0, Umweltbundesamt Projektnummer 27452
-context("The t-test for significant difference from zero")
-
-test_that("The t-value for fits using internal transformations corresponds with result from FME", {
-
- expect_equal(signif(summary(fit.default)$bpar[, "t value"], 5),
- c(parent_0 = 61.720, k_parent_sink = 12.777, k_parent_m1 = 24.248, k_m1_sink = 7.3486))
-
-})
-
-m_synth_DFOP_par.minff <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")),
- M1 = mkinsub("SFO"),
- M2 = mkinsub("SFO"),
- use_of_ff = "min", quiet = TRUE)
-
-fit_DFOP_par_c_2 <- mkinfit(m_synth_DFOP_par.minff,
- synthetic_data_for_UBA_2014[[12]]$data,
- quiet = TRUE)
-
test_that("The t-value for fits using internal transformations corresponds with results from FME, synthetic data", {
+ skip_on_cran()
+ m_synth_DFOP_par.minff <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")),
+ M1 = mkinsub("SFO"),
+ M2 = mkinsub("SFO"),
+ use_of_ff = "min", quiet = TRUE)
+
+ fit_DFOP_par_c_2 <- mkinfit(m_synth_DFOP_par.minff,
+ synthetic_data_for_UBA_2014[[12]]$data,
+ quiet = TRUE)
# Note that the k1 and k2 are exchanged in the untransformed fit evaluated with FME for this test
expect_equal(signif(summary(fit_DFOP_par_c_2)$bpar[1:7, "t value"], 5),
c(parent_0 = 80.054, k_M1_sink = 12.291, k_M2_sink = 10.588,
f_parent_to_M1 = 21.4960, f_parent_to_M2 = 24.0890,
k1 = 16.1450, k2 = 8.1747))
-
})

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