Improve tests, remove geometric_mean

1 files changed, 32 insertions, 0 deletions

diff --git a/tests/testthat/test_SFORB.R b/tests/testthat/test_SFORB.R
new file mode 100644
index 00000000..49b3beed
--- /dev/null
+++ b/tests/testthat/test_SFORB.R
@@ -0,0 +1,32 @@
+# Copyright (C) 2019 Johannes Ranke
+# Contact: jranke@uni-bremen.de
+
+# This file is part of the R package mkin
+
+# mkin is free software: you can redistribute it and/or modify it under the
+# terms of the GNU General Public License as published by the Free Software
+# Foundation, either version 3 of the License, or (at your option) any later
+# version.
+
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+# details.
+
+# You should have received a copy of the GNU General Public License along with
+# this program. If not, see <http://www.gnu.org/licenses/>
+
+context("Fitting the SFORB model")
+
+logistic <- mkinmod(parent = mkinsub("logistic"))
+
+test_that("Fitting the SFORB model is equivalent to fitting DFOP", {
+  f_sforb <- mkinfit("SFORB", FOCUS_2006_C, quiet = TRUE)
+  f_dfop <- mkinfit("DFOP", FOCUS_2006_C, quiet = TRUE)
+  expect_equivalent(endpoints(f_sforb)$distimes, endpoints(f_dfop)$distimes,
+    tolerance = 1e-6)
+  s_sforb <- capture_output(print(summary(f_sforb)))
+  expect_match(s_sforb, "Estimated Eigenvalues of SFORB model\\(s\\):")
+  expect_match(s_sforb, "parent_b1 parent_b2")
+  expect_match(s_sforb, "0.45956 *0.01785")
+})