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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-26 00:57:40 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-26 00:57:40 +0200
commit0d8521f3f60082f0fd27da00a7ac8bcef9ee5ba0 (patch)
tree2065de43684960b6c41d74a59d215b3bc0163ac8 /tests
parent4030a3083d7ca51bc5d606dd95a877fb00967003 (diff)
Make multistart work with testthat scopes
Also skip long-running test with saem using the analytical from mkin
Diffstat (limited to 'tests')
-rw-r--r--tests/testthat/_snaps/multistart/llhist-for-biphasic-saemix-fit.svg61
-rw-r--r--tests/testthat/_snaps/multistart/parhist-for-biphasic-saemix-fit.svg196
-rw-r--r--tests/testthat/test_mixed.R1
-rw-r--r--tests/testthat/test_multistart.R4
-rw-r--r--tests/testthat/test_saemix_parent.R2
5 files changed, 261 insertions, 3 deletions
diff --git a/tests/testthat/_snaps/multistart/llhist-for-biphasic-saemix-fit.svg b/tests/testthat/_snaps/multistart/llhist-for-biphasic-saemix-fit.svg
new file mode 100644
index 00000000..154eb60d
--- /dev/null
+++ b/tests/testthat/_snaps/multistart/llhist-for-biphasic-saemix-fit.svg
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diff --git a/tests/testthat/_snaps/multistart/parhist-for-biphasic-saemix-fit.svg b/tests/testthat/_snaps/multistart/parhist-for-biphasic-saemix-fit.svg
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index 00000000..aa2bc3d4
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diff --git a/tests/testthat/test_mixed.R b/tests/testthat/test_mixed.R
index de030199..e005c982 100644
--- a/tests/testthat/test_mixed.R
+++ b/tests/testthat/test_mixed.R
@@ -24,7 +24,6 @@ test_that("nlme results are reproducible to some degree", {
test_summary$date.summary <- "Dummy date for testing"
test_summary$time <- c(elapsed = "test time 0")
- print(test_summary, digits = 1)
expect_known_output(print(test_summary, digits = 1), "summary_dfop_nlme_1.txt")
# The biphasic example data illustrate that DFOP parameters are difficult to
diff --git a/tests/testthat/test_multistart.R b/tests/testthat/test_multistart.R
index 04f08aa7..e0b1ecd7 100644
--- a/tests/testthat/test_multistart.R
+++ b/tests/testthat/test_multistart.R
@@ -1,4 +1,6 @@
-test_that("multistart works for saem.mmix models", {
+context("Multistart method for saem.mmkin models")
+
+test_that("multistart works for saem.mmkin models", {
saem_biphasic_m_multi <- multistart(saem_biphasic_m, n = 8,
cores = n_cores)
expect_known_output(print(saem_biphasic_m_multi),
diff --git a/tests/testthat/test_saemix_parent.R b/tests/testthat/test_saemix_parent.R
index 4504e573..d8b6b19e 100644
--- a/tests/testthat/test_saemix_parent.R
+++ b/tests/testthat/test_saemix_parent.R
@@ -140,7 +140,7 @@ test_that("We can also use mkin solution methods for saem", {
expect_error(saem(mmkin_dfop_1, quiet = TRUE, transformations = "saemix", solution_type = "analytical"),
"saemix transformations is only supported if an analytical solution is implemented"
)
- skip_on_cran() # This still takes almost 2.5 minutes although we do not solve ODEs
+ skip("This still takes almost 2.5 minutes although we do not solve ODEs")
dfop_saemix_3 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin",
solution_type = "analytical", no_random_effect = "parent_0")
distimes_dfop <- endpoints(dfop_saemix_1)$distimes

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