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| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-08-08 10:11:04 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-08-08 10:11:04 +0200 |
| commit | 22d21cf5efcfb52c59c969d393bb0be077e982dd (patch) | |
| tree | c8d97e7fff25d42019bb5a5908a5ce228cac6fb5 /tests | |
| parent | 546c540fecb60b51c3e265911282881315a8c937 (diff) | |
Fix fitting HS with saemix transformations
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/testthat/test_saemix_parent.R | 15 |
1 files changed, 8 insertions, 7 deletions
diff --git a/tests/testthat/test_saemix_parent.R b/tests/testthat/test_saemix_parent.R index 731228d9..7f550999 100644 --- a/tests/testthat/test_saemix_parent.R +++ b/tests/testthat/test_saemix_parent.R @@ -10,6 +10,7 @@ test_that("Parent fits using saemix are correctly implemented", { sfo_saem_2 <- saem(mmkin_sfo_1, quiet = TRUE, transformations = "mkin") sfo_saem_3 <- expect_error(saem(mmkin_sfo_2, quiet = TRUE), "at least two parameters") + expect_equal(endpoints(sfo_saem_1), endpoints(sfo_saem_2), tol = 0.01) s_sfo_s1 <- summary(sfo_saem_1) s_sfo_s2 <- summary(sfo_saem_2) @@ -76,20 +77,20 @@ test_that("Parent fits using saemix are correctly implemented", { mmkin_hs_1 <- mmkin("HS", ds_hs, quiet = TRUE, error_model = "const", cores = n_cores) hs_saem_1 <- saem(mmkin_hs_1, quiet = TRUE) + hs_saem_2 <- saem(mmkin_hs_1, quiet = TRUE, transformations = "mkin") + expect_equal(endpoints(hs_saem_1), endpoints(hs_saem_2), tol = 0.01) ci_hs_s1 <- summary(hs_saem_1)$confint_back hs_pop <- as.numeric(hs_pop) - # expect_true(all(ci_hs_s1[, "lower"] < hs_pop)) # k1 is overestimated + #expect_true(all(ci_hs_s1[, "lower"] < hs_pop)) # k1 is overestimated expect_true(all(ci_hs_s1[, "upper"] > hs_pop)) mmkin_hs_2 <- update(mmkin_hs_1, state.ini = 100, fixed_initials = "parent") - hs_saem_2 <- saem(mmkin_hs_2, quiet = TRUE) - ci_hs_s2 <- summary(hs_saem_2)$confint_back + hs_saem_3 <- saem(mmkin_hs_2, quiet = TRUE) + ci_hs_s3 <- summary(hs_saem_3)$confint_back - #expect_true(all(ci_hs_s2[, "lower"] < hs_pop[2:4])) # k1 again overestimated - expect_true(all(ci_hs_s2[, "upper"] > hs_pop[2:4])) - - # HS would likely benefit from implemenation of transformations = "saemix" + #expect_true(all(ci_hs_s3[, "lower"] < hs_pop[2:4])) # k1 again overestimated + expect_true(all(ci_hs_s3[, "upper"] > hs_pop[2:4])) }) test_that("We can also use mkin solution methods for saem", { |