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authorJohannes Ranke <jranke@uni-bremen.de>2023-04-20 19:53:28 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2023-04-20 20:03:32 +0200
commit9ae42bd20bc2543a94cf1581ba9820c2f9e3afbd (patch)
treeb3539a9689f5930b8444a5fc459781b825e00fa4 /vignettes/prebuilt
parentad0efc2d16a84c674307ad2df9d44153b44a9cf8 (diff)
Fix and rebuild documentation, see NEWS
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
Diffstat (limited to 'vignettes/prebuilt')
-rw-r--r--vignettes/prebuilt/2022_cyan_pathway.pdfbin662810 -> 680647 bytes
-rw-r--r--vignettes/prebuilt/2022_cyan_pathway.rmd3
-rw-r--r--vignettes/prebuilt/2022_dmta_pathway.pdfbin607514 -> 607671 bytes
-rw-r--r--vignettes/prebuilt/2022_dmta_pathway.rmd3
4 files changed, 2 insertions, 4 deletions
diff --git a/vignettes/prebuilt/2022_cyan_pathway.pdf b/vignettes/prebuilt/2022_cyan_pathway.pdf
index 9d2d22ea..ec37706f 100644
--- a/vignettes/prebuilt/2022_cyan_pathway.pdf
+++ b/vignettes/prebuilt/2022_cyan_pathway.pdf
Binary files differ
diff --git a/vignettes/prebuilt/2022_cyan_pathway.rmd b/vignettes/prebuilt/2022_cyan_pathway.rmd
index d0b2c889..8463c854 100644
--- a/vignettes/prebuilt/2022_cyan_pathway.rmd
+++ b/vignettes/prebuilt/2022_cyan_pathway.rmd
@@ -1,7 +1,7 @@
---
title: "Testing hierarchical pathway kinetics with residue data on cyantraniliprole"
author: Johannes Ranke
-date: Last change on 6 January 2023, last compiled on `r format(Sys.time(), "%e
+date: Last change on 20 April 2023, last compiled on `r format(Sys.time(), "%e
%B %Y")`
output:
pdf_document:
@@ -542,7 +542,6 @@ for (deg_mod in rownames(f_saem_3)) {
## Session info
```{r, echo = FALSE, cache = FALSE}
-parallel::stopCluster(cl = cl)
sessionInfo()
```
diff --git a/vignettes/prebuilt/2022_dmta_pathway.pdf b/vignettes/prebuilt/2022_dmta_pathway.pdf
index 56534ebf..95d0964d 100644
--- a/vignettes/prebuilt/2022_dmta_pathway.pdf
+++ b/vignettes/prebuilt/2022_dmta_pathway.pdf
Binary files differ
diff --git a/vignettes/prebuilt/2022_dmta_pathway.rmd b/vignettes/prebuilt/2022_dmta_pathway.rmd
index f787daf2..1e1a0719 100644
--- a/vignettes/prebuilt/2022_dmta_pathway.rmd
+++ b/vignettes/prebuilt/2022_dmta_pathway.rmd
@@ -1,7 +1,7 @@
---
title: "Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P"
author: Johannes Ranke
-date: Last change on 8 January 2023, last compiled on `r format(Sys.time(), "%e %B %Y")`
+date: Last change on 20 April 2023, last compiled on `r format(Sys.time(), "%e %B %Y")`
geometry: margin=2cm
bibliography: references.bib
toc: true
@@ -423,7 +423,6 @@ tex_listing(saem_sforb_path_1_tc_reduced, caption)
## Session info
```{r, echo = FALSE}
-parallel::stopCluster(cl)
sessionInfo()
```

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