- Fitting and summaries now work with the new parameter transformations.

- The SFORB models with metabolites is broken (see TODO)
- Moved the vignette to the location recommended since R 2.14
- Added the missing documentation
- Commented out the schaefer_complex_case test, as this version of
  mkin is not able to fit a model without sink and therefore 
  mkin estimated parameters are quite different




git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@22 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

1 files changed, 62 insertions, 0 deletions

diff --git a/vignettes/references.bib b/vignettes/references.bib
new file mode 100644
index 00000000..24672e2e
--- /dev/null
+++ b/vignettes/references.bib
@@ -0,0 +1,62 @@
+@Manual{pkg:kinfit,

+    title = {kinfit: {R}outines for fitting simple kinetic models to chemical degradation data},

+    author = {Johannes Ranke},

+    year = {2010},

+    url = {http://CRAN.R-project.org}

+}

+

+@Manual{pkg:mkin,

+    title = {mkin: {R}outines for fitting kinetic models with one or more state variables to chemical degradation data},

+    author = {Johannes Ranke},

+    year = {2010},

+    url = {http://CRAN.R-project.org}

+}

+

+@Article{soetaert10,

+    title = {Inverse Modelling, Sensitivity and Monte Carlo Analysis in {R} Using Package {FME}},

+    author = {Karline Soetaert and Thomas Petzoldt},

+    journal = {Journal of Statistical Software},

+    year = {2010},

+    volume = {33},

+    number = {3},

+    pages = {1--28},

+    url = {http://www.jstatsoft.org/v33/i03/}

+}

+

+@Manual{          rcore2010,

+  title         = {\textsf{R}: A Language and Environment for Statistical

+                  Computing},

+  author        = {{R Development Core Team}},

+  organization  = {R Foundation for Statistical Computing},

+  address       = {Vienna, Austria},

+  year          = 2010,

+  note          = {{ISBN} 3-900051-07-0},

+  url           = {http://www.R-project.org}

+}

+

+@Manual{          FOCUS2006,

+  title         = {Guidance Document on Estimating Persistence and

+  Degradation Kinetics from Environmental Fate Studies on Pesticides in EU

+  Registration. Report of the FOCUS Work Group on Degradation Kinetics},

+  note          = {EC Document Reference Sanco/10058/2005 version 2.0},

+  author        = {{FOCUS Work Group on Degradation Kinetics}},

+  year          = {2006},

+  url           = {http://focus.jrc.ec.europa.eu/dk} 

+}

+

+@Inproceedings{   schaefer2007,

+  title         = {{KinGUI}: a new kinetic software tool for evaluations according to FOCUS degradation kinetics},

+  author       = {D. Sch\"{a}fer and M. Mikolasch and P. Rainbird and B. Harvey},

+  booktitle    = {Proceedings of the XIII Symposium Pesticide Chemistry},

+  editor       = {Del Re A. A. M. and Capri E. and Fragoulis G. and Trevisan M.},

+  year          = {2007},

+  address       = {Piacenza},

+  pages         = {916--923}

+}

+

+@Book{            bates88,

+  title         = {Nonlinear regression and its applications},

+  author        = {D. Bates and D. Watts},

+  year          = {1988},

+  publisher     = {Wiley-Interscience}

+}