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| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-05-18 21:26:17 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-05-18 21:26:17 +0200 |
| commit | 91c5db736a4d3f2290a0cc5698fb4e35ae7bda59 (patch) | |
| tree | 8e9e34d18f055936172329c1248e6e2ff136bff9 /vignettes/web_only/benchmarks.rmd | |
| parent | ea57db98cef3fb882f7bd9656b44f270e7bded38 (diff) | |
Remove outdated comment in FOCUS L vignette, update docs
This also adds the first benchmark results obtained on my laptop system
Diffstat (limited to 'vignettes/web_only/benchmarks.rmd')
| -rw-r--r-- | vignettes/web_only/benchmarks.rmd | 16 |
1 files changed, 3 insertions, 13 deletions
diff --git a/vignettes/web_only/benchmarks.rmd b/vignettes/web_only/benchmarks.rmd index c743234d..9697f96b 100644 --- a/vignettes/web_only/benchmarks.rmd +++ b/vignettes/web_only/benchmarks.rmd @@ -116,16 +116,6 @@ save(mkin_benchmarks, file = "~/git/mkin/vignettes/web_only/mkin_benchmarks.rda" ## Results -Currently, we only have benchmark information on one system, therefore only the mkin -version is shown with the results below. Timings are in seconds, shorter is better. -All results were obtained by serial, i.e. not using multiple computing cores. - -```{r, include = FALSE} -dimnames(mkin_benchmarks) <- list(as.character(mkin_benchmarks$mkin), - c("CPU", "OS", "mkin version", paste0("t", 1:11, " [s]"))) -``` - - Benchmarks for all available error models are shown. ### Parent only @@ -134,7 +124,7 @@ Constant variance (t1) and two-component error model (t2) for four models fitted to two datasets, i.e. eight fits for each test. ```{r, echo = FALSE} -kable(mkin_benchmarks[, 4:5], rownames = "mkin version") +kable(mkin_benchmarks[, 4:5]) ``` ### One metabolite @@ -143,7 +133,7 @@ Constant variance (t3), two-component error model (t4), and variance by variable for three models fitted to one dataset, i.e. three fits for each test. ```{r, echo = FALSE} -kable(mkin_benchmarks[, 6:8], rownames = "mkin version") +kable(mkin_benchmarks[, 6:8]) ``` ### Two metabolites @@ -153,5 +143,5 @@ variance by variable (t10 and t11) for one model fitted to one dataset, i.e. one fit for each test. ```{r, echo = FALSE} -kable(mkin_benchmarks[, 9:14], rownames = "mkin version") +kable(mkin_benchmarks[, 9:14]) ``` |