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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-26 14:13:09 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-26 14:13:09 +0200
commit0e9220c6b9132602a3d69e4be582a02da8b07822 (patch)
tree327aed436a0bfc4df33e42f55fb2d56b04785a85 /vignettes/web_only/multistart.R
parentc615bd685d6a109306e68ea7b0516ba3d6805114 (diff)
Really test anova output, test covariates
Diffstat (limited to 'vignettes/web_only/multistart.R')
-rw-r--r--vignettes/web_only/multistart.R36
1 files changed, 0 insertions, 36 deletions
diff --git a/vignettes/web_only/multistart.R b/vignettes/web_only/multistart.R
deleted file mode 100644
index 36612443..00000000
--- a/vignettes/web_only/multistart.R
+++ /dev/null
@@ -1,36 +0,0 @@
-## -----------------------------------------------------------------------------
-library(mkin)
-dmta_ds <- lapply(1:7, function(i) {
- ds_i <- dimethenamid_2018$ds[[i]]$data
- ds_i[ds_i$name == "DMTAP", "name"] <- "DMTA"
- ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i]
- ds_i
-})
-names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title)
-dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]])
-dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL
-
-## -----------------------------------------------------------------------------
-f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE)
-f_saem_full <- saem(f_mmkin)
-illparms(f_saem_full)
-
-## -----------------------------------------------------------------------------
-f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16)
-parhist(f_saem_full_multi)
-
-## -----------------------------------------------------------------------------
-f_saem_reduced <- update(f_saem_full, no_random_effect = "log_k2")
-illparms(f_saem_reduced)
-f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cores = 16)
-parhist(f_saem_reduced_multi, lpos = "topright")
-
-## -----------------------------------------------------------------------------
-llhist(f_saem_reduced_multi)
-
-## -----------------------------------------------------------------------------
-parhist(f_saem_reduced_multi, lpos = "topright", llmin = -326, ylim = c(0.5, 2))
-
-## -----------------------------------------------------------------------------
-anova(f_saem_full, best(f_saem_reduced_multi), test = TRUE)
-

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