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authorJohannes Ranke <jranke@uni-bremen.de>2020-05-11 05:15:19 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-05-11 05:18:32 +0200
commit234c9059a95e104917e488a6ddd2313234a96cdc (patch)
treef6e54098f79d94578434ef727b62f7cc5d5e79b7 /vignettes/web_only
parentd113cd79b178fdc91aecb894707ed356129dfb75 (diff)
Avoid merge() and data.frame() in cost function
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
Diffstat (limited to 'vignettes/web_only')
-rw-r--r--vignettes/web_only/benchmarks.html22
1 files changed, 11 insertions, 11 deletions
diff --git a/vignettes/web_only/benchmarks.html b/vignettes/web_only/benchmarks.html
index c80a7e44..337ccbb3 100644
--- a/vignettes/web_only/benchmarks.html
+++ b/vignettes/web_only/benchmarks.html
@@ -11,7 +11,7 @@
<meta name="author" content="Johannes Ranke" />
-<meta name="date" content="2020-05-10" />
+<meta name="date" content="2020-05-11" />
<title>Benchmark timings for mkin on various systems</title>
@@ -1583,7 +1583,7 @@ div.tocify {
<h1 class="title toc-ignore">Benchmark timings for mkin on various systems</h1>
<h4 class="author">Johannes Ranke</h4>
-<h4 class="date">2020-05-10</h4>
+<h4 class="date">2020-05-11</h4>
</div>
@@ -1662,63 +1662,63 @@ mkin_benchmarks[, -c(1:3)]</code></pre>
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 7.064
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 7.296
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 5.936
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 1.658
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 1.678
## t2
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 11.019
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 22.889
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 12.558
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 21.239
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 20.545
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 3.820
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 3.837
## t3
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 3.764
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 4.649
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 4.786
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 4.510
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 4.446
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 3.424
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 1.372
## t4
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 14.347
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 13.789
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 8.461
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 13.805
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 15.335
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 18.375
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 6.071
## t5 t6
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 9.495 2.623
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 6.395 2.542
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 5.675 2.723
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 7.386 2.643
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 6.002 2.635
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 7.480 2.188
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 2.709 0.746
## t7 t8
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 4.587 7.525
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 4.128 4.632
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 4.478 4.862
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 4.374 7.02
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 4.259 4.737
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 3.69 3.87
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 1.208 1.268
## t9
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 16.621
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 8.171
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 7.618
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 11.124
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 7.763
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 8.872
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 2.836
## t10
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 8.576
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 3.676
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 3.579
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 5.388
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 3.427
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 6.257
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 2.019
## t11
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.48.1 31.267
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.1 5.636
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.2 5.574
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.3 7.365
## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.49.4 5.626
-## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 9.289</code></pre>
+## Linux, AMD Ryzen 7 1700 Eight-Core Processor, mkin version 0.9.50 2.951</code></pre>
<pre class="r"><code>save(mkin_benchmarks, file = &quot;~/git/mkin/vignettes/mkin_benchmarks.rda&quot;)</code></pre>
</div>

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