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Diffstat (limited to 'docs/articles/FOCUS_L.html')
| -rw-r--r-- | docs/articles/FOCUS_L.html | 62 |
1 files changed, 31 insertions, 31 deletions
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index ab9739bc..7074816c 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -31,7 +31,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.4</span> </span> </div> @@ -94,13 +94,13 @@ - </header><script src="FOCUS_L_files/header-attrs-2.6/header-attrs.js"></script><script src="FOCUS_L_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row"> + </header><script src="FOCUS_L_files/header-attrs-2.7/header-attrs.js"></script><script src="FOCUS_L_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row"> <div class="col-md-9 contents"> <div class="page-header toc-ignore"> <h1 data-toc-skip>Example evaluation of FOCUS Laboratory Data L1 to L3</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">Last change 17 November 2016 (rebuilt 2021-02-15)</h4> + <h4 class="date">Last change 17 November 2016 (rebuilt 2021-03-31)</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/master/vignettes/FOCUS_L.rmd"><code>vignettes/FOCUS_L.rmd</code></a></small> <div class="hidden name"><code>FOCUS_L.rmd</code></div> @@ -126,10 +126,10 @@ <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="va">m.L1.SFO</span> <span class="op"><-</span> <span class="fu"><a href="../reference/mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="va">FOCUS_2006_L1_mkin</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span> <span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">m.L1.SFO</span><span class="op">)</span></code></pre></div> -<pre><code>## mkin version used for fitting: 1.0.3 -## R version used for fitting: 4.0.3 -## Date of fit: Mon Feb 15 17:50:30 2021 -## Date of summary: Mon Feb 15 17:50:30 2021 +<pre><code>## mkin version used for fitting: 1.0.4 +## R version used for fitting: 4.0.4 +## Date of fit: Wed Mar 31 19:18:31 2021 +## Date of summary: Wed Mar 31 19:18:31 2021 ## ## Equations: ## d_parent/dt = - k_parent * parent @@ -232,10 +232,10 @@ <pre><code>## Warning in sqrt(1/diag(V)): NaNs produced</code></pre> <pre><code>## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result is ## doubtful</code></pre> -<pre><code>## mkin version used for fitting: 1.0.3 -## R version used for fitting: 4.0.3 -## Date of fit: Mon Feb 15 17:50:31 2021 -## Date of summary: Mon Feb 15 17:50:31 2021 +<pre><code>## mkin version used for fitting: 1.0.4 +## R version used for fitting: 4.0.4 +## Date of fit: Wed Mar 31 19:18:32 2021 +## Date of summary: Wed Mar 31 19:18:32 2021 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent @@ -344,10 +344,10 @@ <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-9-1.png" width="672"></p> <div class="sourceCode" id="cb17"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">m.L2.FOMC</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div> -<pre><code>## mkin version used for fitting: 1.0.3 -## R version used for fitting: 4.0.3 -## Date of fit: Mon Feb 15 17:50:31 2021 -## Date of summary: Mon Feb 15 17:50:31 2021 +<pre><code>## mkin version used for fitting: 1.0.4 +## R version used for fitting: 4.0.4 +## Date of fit: Wed Mar 31 19:18:32 2021 +## Date of summary: Wed Mar 31 19:18:32 2021 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent @@ -425,10 +425,10 @@ <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-10-1.png" width="672"></p> <div class="sourceCode" id="cb20"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">m.L2.DFOP</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div> -<pre><code>## mkin version used for fitting: 1.0.3 -## R version used for fitting: 4.0.3 -## Date of fit: Mon Feb 15 17:50:32 2021 -## Date of summary: Mon Feb 15 17:50:32 2021 +<pre><code>## mkin version used for fitting: 1.0.4 +## R version used for fitting: 4.0.4 +## Date of fit: Wed Mar 31 19:18:33 2021 +## Date of summary: Wed Mar 31 19:18:33 2021 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -531,10 +531,10 @@ <p>We can extract the summary and plot for <em>e.g.</em> the DFOP fit, using square brackets for indexing which will result in the use of the summary and plot functions working on mkinfit objects.</p> <div class="sourceCode" id="cb24"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">mm.L3</span><span class="op">[[</span><span class="st">"DFOP"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></code></pre></div> -<pre><code>## mkin version used for fitting: 1.0.3 -## R version used for fitting: 4.0.3 -## Date of fit: Mon Feb 15 17:50:32 2021 -## Date of summary: Mon Feb 15 17:50:32 2021 +<pre><code>## mkin version used for fitting: 1.0.4 +## R version used for fitting: 4.0.4 +## Date of fit: Wed Mar 31 19:18:33 2021 +## Date of summary: Wed Mar 31 19:18:33 2021 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -644,10 +644,10 @@ <p>The <span class="math inline">\(\chi^2\)</span> error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the <span class="math inline">\(\chi^2\)</span> test passes is slightly lower for the FOMC model. However, the difference appears negligible.</p> <div class="sourceCode" id="cb29"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"SFO"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div> -<pre><code>## mkin version used for fitting: 1.0.3 -## R version used for fitting: 4.0.3 -## Date of fit: Mon Feb 15 17:50:33 2021 -## Date of summary: Mon Feb 15 17:50:33 2021 +<pre><code>## mkin version used for fitting: 1.0.4 +## R version used for fitting: 4.0.4 +## Date of fit: Wed Mar 31 19:18:34 2021 +## Date of summary: Wed Mar 31 19:18:34 2021 ## ## Equations: ## d_parent/dt = - k_parent * parent @@ -709,10 +709,10 @@ ## parent 106 352</code></pre> <div class="sourceCode" id="cb31"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"FOMC"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div> -<pre><code>## mkin version used for fitting: 1.0.3 -## R version used for fitting: 4.0.3 -## Date of fit: Mon Feb 15 17:50:33 2021 -## Date of summary: Mon Feb 15 17:50:33 2021 +<pre><code>## mkin version used for fitting: 1.0.4 +## R version used for fitting: 4.0.4 +## Date of fit: Wed Mar 31 19:18:34 2021 +## Date of summary: Wed Mar 31 19:18:34 2021 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent |