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Diffstat (limited to 'docs/articles/FOCUS_L.html')
| -rw-r--r-- | docs/articles/FOCUS_L.html | 56 |
1 files changed, 28 insertions, 28 deletions
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index a23876ec..08e144bd 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -80,7 +80,7 @@ <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2018-03-11</h4> + <h4 class="date">2018-03-21</h4> </div> @@ -102,16 +102,16 @@ FOCUS_<span class="dv">2006</span>_L1_mkin <-<span class="st"> </span><span c <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">m.L1.SFO <-<span class="st"> </span><span class="kw"><a href="../reference/mkinfit.html">mkinfit</a></span>(<span class="st">"SFO"</span>, FOCUS_<span class="dv">2006</span>_L1_mkin, <span class="dt">quiet =</span> <span class="ot">TRUE</span>) <span class="kw">summary</span>(m.L1.SFO)</code></pre></div> <pre><code>## mkin version: 0.9.46.3 -## R version: 3.4.3 -## Date of fit: Sun Mar 11 22:11:58 2018 -## Date of summary: Sun Mar 11 22:11:58 2018 +## R version: 3.4.4 +## Date of fit: Wed Mar 21 18:16:03 2018 +## Date of summary: Wed Mar 21 18:16:03 2018 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 37 model solutions performed in 0.235 s +## Fitted with method Port using 37 model solutions performed in 0.257 s ## ## Weighting: none ## @@ -193,16 +193,16 @@ FOCUS_<span class="dv">2006</span>_L1_mkin <-<span class="st"> </span><span c <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-6-1.png" width="576"></p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div> <pre><code>## mkin version: 0.9.46.3 -## R version: 3.4.3 -## Date of fit: Sun Mar 11 22:12:01 2018 -## Date of summary: Sun Mar 11 22:12:01 2018 +## R version: 3.4.4 +## Date of fit: Wed Mar 21 18:16:05 2018 +## Date of summary: Wed Mar 21 18:16:05 2018 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 611 model solutions performed in 1.458 s +## Fitted with method Port using 611 model solutions performed in 1.404 s ## ## Weighting: none ## @@ -288,16 +288,16 @@ FOCUS_<span class="dv">2006</span>_L2_mkin <-<span class="st"> </span><span c <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-9-1.png" width="672"></p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div> <pre><code>## mkin version: 0.9.46.3 -## R version: 3.4.3 -## Date of fit: Sun Mar 11 22:12:01 2018 -## Date of summary: Sun Mar 11 22:12:01 2018 +## R version: 3.4.4 +## Date of fit: Wed Mar 21 18:16:06 2018 +## Date of summary: Wed Mar 21 18:16:06 2018 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 81 model solutions performed in 0.158 s +## Fitted with method Port using 81 model solutions performed in 0.168 s ## ## Weighting: none ## @@ -359,9 +359,9 @@ FOCUS_<span class="dv">2006</span>_L2_mkin <-<span class="st"> </span><span c <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-10-1.png" width="672"></p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div> <pre><code>## mkin version: 0.9.46.3 -## R version: 3.4.3 -## Date of fit: Sun Mar 11 22:12:02 2018 -## Date of summary: Sun Mar 11 22:12:02 2018 +## R version: 3.4.4 +## Date of fit: Wed Mar 21 18:16:06 2018 +## Date of summary: Wed Mar 21 18:16:06 2018 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -370,7 +370,7 @@ FOCUS_<span class="dv">2006</span>_L2_mkin <-<span class="st"> </span><span c ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.681 s +## Fitted with method Port using 336 model solutions performed in 0.719 s ## ## Weighting: none ## @@ -451,9 +451,9 @@ mm.L3 <-<span class="st"> </span><span class="kw"><a href="../reference/mmkin <p>We can extract the summary and plot for <em>e.g.</em> the DFOP fit, using square brackets for indexing which will result in the use of the summary and plot functions working on mkinfit objects.</p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</code></pre></div> <pre><code>## mkin version: 0.9.46.3 -## R version: 3.4.3 -## Date of fit: Sun Mar 11 22:12:03 2018 -## Date of summary: Sun Mar 11 22:12:03 2018 +## R version: 3.4.4 +## Date of fit: Wed Mar 21 18:16:07 2018 +## Date of summary: Wed Mar 21 18:16:07 2018 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -462,7 +462,7 @@ mm.L3 <-<span class="st"> </span><span class="kw"><a href="../reference/mmkin ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.272 s +## Fitted with method Port using 137 model solutions performed in 0.283 s ## ## Weighting: none ## @@ -552,9 +552,9 @@ mm.L4 <-<span class="st"> </span><span class="kw"><a href="../reference/mmkin <p>The <span class="math inline">\(\chi^2\)</span> error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the <span class="math inline">\(\chi^2\)</span> test passes is slightly lower for the FOMC model. However, the difference appears negligible.</p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div> <pre><code>## mkin version: 0.9.46.3 -## R version: 3.4.3 -## Date of fit: Sun Mar 11 22:12:04 2018 -## Date of summary: Sun Mar 11 22:12:04 2018 +## R version: 3.4.4 +## Date of fit: Wed Mar 21 18:16:08 2018 +## Date of summary: Wed Mar 21 18:16:08 2018 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent @@ -612,16 +612,16 @@ mm.L4 <-<span class="st"> </span><span class="kw"><a href="../reference/mmkin ## parent 106 352</code></pre> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div> <pre><code>## mkin version: 0.9.46.3 -## R version: 3.4.3 -## Date of fit: Sun Mar 11 22:12:04 2018 -## Date of summary: Sun Mar 11 22:12:04 2018 +## R version: 3.4.4 +## Date of fit: Wed Mar 21 18:16:08 2018 +## Date of summary: Wed Mar 21 18:16:08 2018 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 66 model solutions performed in 0.13 s +## Fitted with method Port using 66 model solutions performed in 0.138 s ## ## Weighting: none ## |