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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../../search.json" id="search-input" placeholder="Search for" autocomplete="off"> -</form> - - <ul class="navbar-nav"> -<li class="nav-item"> - <a class="external-link nav-link" href="https://github.com/jranke/mkin/" aria-label="github"> - <span class="fab fa fab fa-github fa-lg"></span> - - </a> -</li> +<ul class="navbar-nav"> +<li class="nav-item"><form class="form-inline" role="search"> + <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../../search.json"> +</form></li> +<li class="nav-item"><a class="external-link nav-link" href="https://github.com/jranke/mkin/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li> </ul> </div> - + </div> </nav><div class="container template-article"> @@ -93,12 +78,13 @@ <div class="row"> <main id="main" class="col-md-9"><div class="page-header"> - <img src="" class="logo" alt=""><h1>Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</h1> + + <h1>Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</h1> <h4 data-toc-skip class="author">Johannes Ranke</h4> <h4 data-toc-skip class="date">Last change on 4 August 2023, -last compiled on 16 November 2023</h4> +last compiled on 12 Mai 2025</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2023_mesotrione_parent.rmd" class="external-link"><code>vignettes/prebuilt/2023_mesotrione_parent.rmd</code></a></small> <div class="d-none name"><code>2023_mesotrione_parent.rmd</code></div> @@ -117,7 +103,7 @@ parameters. Because in some other case studies, the SFORB parameterisation of biexponential decline has shown some advantages over the DFOP parameterisation, SFORB was included in the list of tested models as well.</p> -<p>The mkin package is used in version 1.2.6, which is contains the +<p>The mkin package is used in version 1.2.10, which is contains the functions that were used for the evaluations. The <code>saemix</code> package is used as a backend for fitting the NLHM, but is also loaded to make the convergence plot function available.</p> @@ -1479,7 +1465,7 @@ according to the <code>illparms</code> function.</p> <tr class="odd"> <td align="left">HS</td> <td align="left"></td> -<td align="left"></td> +<td align="left">b.1</td> </tr> </tbody> </table> @@ -2439,13 +2425,13 @@ further refined to make them fully identifiable.</p> <div class="section level3"> <h3 id="session-info">Session info<a class="anchor" aria-label="anchor" href="#session-info"></a> </h3> -<pre><code>R version 4.3.2 (2023-10-31) -Platform: x86_64-pc-linux-gnu (64-bit) +<pre><code>R version 4.5.0 (2025-04-11) +Platform: x86_64-pc-linux-gnu Running under: Debian GNU/Linux 12 (bookworm) Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.11.0 -LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0 +LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0 LAPACK version 3.11.0 locale: [1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C @@ -2463,53 +2449,51 @@ attached base packages: [8] base other attached packages: -[1] saemix_3.2 npde_3.3 knitr_1.42 mkin_1.2.6 +[1] rmarkdown_2.29 nvimcom_0.9-167 saemix_3.3 npde_3.5 +[5] knitr_1.49 mkin_1.2.10 loaded via a namespace (and not attached): - [1] sass_0.4.6 utf8_1.2.3 generics_0.1.3 stringi_1.7.12 - [5] lattice_0.21-8 digest_0.6.31 magrittr_2.0.3 evaluate_0.21 - [9] grid_4.3.2 fastmap_1.1.1 rprojroot_2.0.3 jsonlite_1.8.4 -[13] DBI_1.1.3 mclust_6.0.0 gridExtra_2.3 purrr_1.0.1 -[17] fansi_1.0.4 scales_1.2.1 textshaping_0.3.6 jquerylib_0.1.4 -[21] cli_3.6.1 rlang_1.1.1 munsell_0.5.0 cachem_1.0.8 -[25] yaml_2.3.7 tools_4.3.2 memoise_2.0.1 dplyr_1.1.2 -[29] colorspace_2.1-0 ggplot2_3.4.2 vctrs_0.6.2 R6_2.5.1 -[33] zoo_1.8-12 lifecycle_1.0.3 stringr_1.5.0 fs_1.6.2 -[37] MASS_7.3-60 ragg_1.2.5 pkgconfig_2.0.3 desc_1.4.2 -[41] pkgdown_2.0.7 bslib_0.4.2 pillar_1.9.0 gtable_0.3.3 -[45] glue_1.6.2 systemfonts_1.0.4 xfun_0.39 tibble_3.2.1 -[49] lmtest_0.9-40 tidyselect_1.2.0 htmltools_0.5.5 nlme_3.1-163 -[53] rmarkdown_2.21 compiler_4.3.2 </code></pre> + [1] gtable_0.3.6 jsonlite_1.9.0 dplyr_1.1.4 compiler_4.5.0 + [5] tidyselect_1.2.1 gridExtra_2.3 jquerylib_0.1.4 systemfonts_1.2.1 + [9] scales_1.3.0 textshaping_1.0.0 readxl_1.4.4 yaml_2.3.10 +[13] fastmap_1.2.0 lattice_0.22-6 ggplot2_3.5.1 R6_2.6.1 +[17] generics_0.1.3 lmtest_0.9-40 MASS_7.3-65 htmlwidgets_1.6.4 +[21] tibble_3.2.1 desc_1.4.3 munsell_0.5.1 bslib_0.9.0 +[25] pillar_1.10.1 rlang_1.1.5 cachem_1.1.0 xfun_0.51 +[29] fs_1.6.5 sass_0.4.9 cli_3.6.4 pkgdown_2.1.1 +[33] magrittr_2.0.3 digest_0.6.37 grid_4.5.0 mclust_6.1.1 +[37] lifecycle_1.0.4 nlme_3.1-168 vctrs_0.6.5 evaluate_1.0.3 +[41] glue_1.8.0 cellranger_1.1.0 codetools_0.2-20 ragg_1.3.3 +[45] zoo_1.8-13 colorspace_2.1-1 tools_4.5.0 pkgconfig_2.0.3 +[49] htmltools_0.5.8.1</code></pre> </div> <div class="section level3"> <h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a> </h3> <pre><code>CPU model: AMD Ryzen 9 7950X 16-Core Processor</code></pre> -<pre><code>MemTotal: 64928100 kB</code></pre> +<pre><code>MemTotal: 64927780 kB</code></pre> </div> </div> - </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> + </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2> </nav></aside> </div> <footer><div class="pkgdown-footer-left"> - <p></p> -<p>Developed by Johannes Ranke.</p> + <p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown-footer-right"> - <p></p> -<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p> </div> </footer> </div> - - + + </body> </html> |