diff options
Diffstat (limited to 'docs/dev/articles/prebuilt')
4 files changed, 51 insertions, 55 deletions
diff --git a/docs/dev/articles/prebuilt/2022_cyan_pathway.html b/docs/dev/articles/prebuilt/2022_cyan_pathway.html index b93e5e7e..0a37915d 100644 --- a/docs/dev/articles/prebuilt/2022_cyan_pathway.html +++ b/docs/dev/articles/prebuilt/2022_cyan_pathway.html @@ -85,7 +85,7 @@ Ranke</h4> <h4 data-toc-skip class="date">Last change on 13 February -2023, last compiled on 14 Februar 2025</h4> +2023, last compiled on 16 Februar 2025</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_cyan_pathway.rmd" class="external-link"><code>vignettes/prebuilt/2022_cyan_pathway.rmd</code></a></small> <div class="d-none name"><code>2022_cyan_pathway.rmd</code></div> @@ -2254,7 +2254,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:42:26 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - k_cyan * cyan @@ -2382,7 +2382,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:42:06 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - k_cyan * cyan @@ -2512,7 +2512,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:42:57 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan @@ -2657,7 +2657,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:42:50 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan @@ -2795,7 +2795,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:43:33 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -2941,7 +2941,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:46:07 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -3087,7 +3087,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:43:36 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound * @@ -3252,7 +3252,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:46:14 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound * @@ -3417,7 +3417,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:43:42 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - ifelse(time <= tb, k1, k2) * cyan @@ -3563,7 +3563,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:54:36 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan @@ -3729,7 +3729,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:55:32 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -3920,7 +3920,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:57:56 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -4111,7 +4111,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:55:26 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound * @@ -4307,7 +4307,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 07:58:06 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:40 2025 Equations: d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound * @@ -4508,7 +4508,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 08:11:01 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:41 2025 Equations: d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan @@ -4651,7 +4651,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 08:12:27 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:41 2025 Equations: d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -4817,7 +4817,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 08:12:54 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:41 2025 Equations: d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -4983,7 +4983,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 08:12:32 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:41 2025 Equations: d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound * @@ -5154,7 +5154,7 @@ saemix version used for fitting: 3.3 mkin version used for pre-fitting: 1.2.10 R version used for fitting: 4.4.2 Date of fit: Fri Feb 14 08:12:36 2025 -Date of summary: Fri Feb 14 08:12:55 2025 +Date of summary: Sun Feb 16 17:03:41 2025 Equations: d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound * @@ -5345,25 +5345,22 @@ attached base packages: [8] base other attached packages: -[1] rmarkdown_2.29 nvimcom_0.9-167 saemix_3.3 npde_3.5 -[5] knitr_1.49 mkin_1.2.10 +[1] saemix_3.3 npde_3.5 knitr_1.49 mkin_1.2.10 loaded via a namespace (and not attached): - [1] sass_0.4.9 utf8_1.2.4 generics_0.1.3 lattice_0.22-6 - [5] digest_0.6.37 magrittr_2.0.3 evaluate_1.0.1 grid_4.4.2 - [9] fastmap_1.2.0 cellranger_1.1.0 jsonlite_1.8.9 processx_3.8.4 -[13] pkgbuild_1.4.5 deSolve_1.40 mclust_6.1.1 ps_1.8.1 -[17] gridExtra_2.3 fansi_1.0.6 scales_1.3.0 codetools_0.2-20 -[21] textshaping_0.4.1 jquerylib_0.1.4 cli_3.6.3 rlang_1.1.4 -[25] munsell_0.5.1 cachem_1.1.0 yaml_2.3.10 inline_0.3.20 -[29] tools_4.4.2 dplyr_1.1.4 colorspace_2.1-1 ggplot2_3.5.1 -[33] vctrs_0.6.5 R6_2.5.1 zoo_1.8-12 lifecycle_1.0.4 -[37] fs_1.6.5 htmlwidgets_1.6.4 MASS_7.3-61 ragg_1.3.3 -[41] callr_3.7.6 pkgconfig_2.0.3 desc_1.4.3 pkgdown_2.1.1 -[45] pillar_1.9.0 bslib_0.8.0 gtable_0.3.6 glue_1.8.0 -[49] systemfonts_1.1.0 xfun_0.49 tibble_3.2.1 lmtest_0.9-40 -[53] tidyselect_1.2.1 htmltools_0.5.8.1 nlme_3.1-166 compiler_4.4.2 -[57] readxl_1.4.3 </code></pre> + [1] gtable_0.3.6 jsonlite_1.8.9 dplyr_1.1.4 compiler_4.4.2 + [5] tidyselect_1.2.1 gridExtra_2.3 jquerylib_0.1.4 systemfonts_1.1.0 + [9] scales_1.3.0 textshaping_0.4.1 yaml_2.3.10 fastmap_1.2.0 +[13] lattice_0.22-6 ggplot2_3.5.1 R6_2.5.1 generics_0.1.3 +[17] lmtest_0.9-40 MASS_7.3-61 htmlwidgets_1.6.4 tibble_3.2.1 +[21] desc_1.4.3 munsell_0.5.1 bslib_0.8.0 pillar_1.9.0 +[25] rlang_1.1.4 utf8_1.2.4 inline_0.3.20 cachem_1.1.0 +[29] xfun_0.49 fs_1.6.5 sass_0.4.9 cli_3.6.3 +[33] pkgdown_2.1.1 magrittr_2.0.3 digest_0.6.37 grid_4.4.2 +[37] mclust_6.1.1 lifecycle_1.0.4 nlme_3.1-166 vctrs_0.6.5 +[41] evaluate_1.0.1 glue_1.8.0 ragg_1.3.3 zoo_1.8-12 +[45] fansi_1.0.6 colorspace_2.1-1 rmarkdown_2.29 pkgconfig_2.0.3 +[49] tools_4.4.2 htmltools_0.5.8.1</code></pre> </div> <div class="section level3"> <h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a> diff --git a/docs/dev/articles/prebuilt/2022_dmta_parent.html b/docs/dev/articles/prebuilt/2022_dmta_parent.html index d900cf00..e4943574 100644 --- a/docs/dev/articles/prebuilt/2022_dmta_parent.html +++ b/docs/dev/articles/prebuilt/2022_dmta_parent.html @@ -85,7 +85,7 @@ Ranke</h4> <h4 data-toc-skip class="date">Last change on 5 January -2023, last compiled on 14 Februar 2025</h4> +2023, last compiled on 16 Februar 2025</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_dmta_parent.rmd" class="external-link"><code>vignettes/prebuilt/2022_dmta_parent.rmd</code></a></small> <div class="d-none name"><code>2022_dmta_parent.rmd</code></div> diff --git a/docs/dev/articles/prebuilt/2022_dmta_pathway.html b/docs/dev/articles/prebuilt/2022_dmta_pathway.html index 92440f1f..f7386a47 100644 --- a/docs/dev/articles/prebuilt/2022_dmta_pathway.html +++ b/docs/dev/articles/prebuilt/2022_dmta_pathway.html @@ -85,7 +85,7 @@ Ranke</h4> <h4 data-toc-skip class="date">Last change on 20 April 2023, -last compiled on 14 Februar 2025</h4> +last compiled on 16 Februar 2025</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_dmta_pathway.rmd" class="external-link"><code>vignettes/prebuilt/2022_dmta_pathway.rmd</code></a></small> <div class="d-none name"><code>2022_dmta_pathway.rmd</code></div> diff --git a/docs/dev/articles/prebuilt/2023_mesotrione_parent.html b/docs/dev/articles/prebuilt/2023_mesotrione_parent.html index 86c7c2dd..501639b6 100644 --- a/docs/dev/articles/prebuilt/2023_mesotrione_parent.html +++ b/docs/dev/articles/prebuilt/2023_mesotrione_parent.html @@ -85,7 +85,7 @@ Ranke</h4> <h4 data-toc-skip class="date">Last change on 4 August 2023, -last compiled on 14 Februar 2025</h4> +last compiled on 16 Februar 2025</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2023_mesotrione_parent.rmd" class="external-link"><code>vignettes/prebuilt/2023_mesotrione_parent.rmd</code></a></small> <div class="d-none name"><code>2023_mesotrione_parent.rmd</code></div> @@ -2450,23 +2450,22 @@ attached base packages: [8] base other attached packages: -[1] rmarkdown_2.29 nvimcom_0.9-167 saemix_3.3 npde_3.5 -[5] knitr_1.49 mkin_1.2.10 +[1] saemix_3.3 npde_3.5 knitr_1.49 mkin_1.2.10 loaded via a namespace (and not attached): - [1] sass_0.4.9 utf8_1.2.4 generics_0.1.3 lattice_0.22-6 - [5] digest_0.6.37 magrittr_2.0.3 evaluate_1.0.1 grid_4.4.2 - [9] fastmap_1.2.0 cellranger_1.1.0 jsonlite_1.8.9 mclust_6.1.1 -[13] gridExtra_2.3 fansi_1.0.6 scales_1.3.0 codetools_0.2-20 -[17] textshaping_0.4.1 jquerylib_0.1.4 cli_3.6.3 rlang_1.1.4 -[21] munsell_0.5.1 cachem_1.1.0 yaml_2.3.10 tools_4.4.2 -[25] dplyr_1.1.4 colorspace_2.1-1 ggplot2_3.5.1 vctrs_0.6.5 -[29] R6_2.5.1 zoo_1.8-12 lifecycle_1.0.4 fs_1.6.5 -[33] htmlwidgets_1.6.4 MASS_7.3-61 ragg_1.3.3 pkgconfig_2.0.3 -[37] desc_1.4.3 pkgdown_2.1.1 pillar_1.9.0 bslib_0.8.0 -[41] gtable_0.3.6 glue_1.8.0 systemfonts_1.1.0 xfun_0.49 -[45] tibble_3.2.1 lmtest_0.9-40 tidyselect_1.2.1 htmltools_0.5.8.1 -[49] nlme_3.1-166 compiler_4.4.2 readxl_1.4.3 </code></pre> + [1] gtable_0.3.6 jsonlite_1.8.9 dplyr_1.1.4 compiler_4.4.2 + [5] tidyselect_1.2.1 gridExtra_2.3 jquerylib_0.1.4 systemfonts_1.1.0 + [9] scales_1.3.0 textshaping_0.4.1 yaml_2.3.10 fastmap_1.2.0 +[13] lattice_0.22-6 ggplot2_3.5.1 R6_2.5.1 generics_0.1.3 +[17] lmtest_0.9-40 MASS_7.3-61 htmlwidgets_1.6.4 tibble_3.2.1 +[21] desc_1.4.3 munsell_0.5.1 bslib_0.8.0 pillar_1.9.0 +[25] rlang_1.1.4 utf8_1.2.4 cachem_1.1.0 xfun_0.49 +[29] fs_1.6.5 sass_0.4.9 cli_3.6.3 pkgdown_2.1.1 +[33] magrittr_2.0.3 digest_0.6.37 grid_4.4.2 mclust_6.1.1 +[37] lifecycle_1.0.4 nlme_3.1-166 vctrs_0.6.5 evaluate_1.0.1 +[41] glue_1.8.0 ragg_1.3.3 zoo_1.8-12 fansi_1.0.6 +[45] colorspace_2.1-1 rmarkdown_2.29 pkgconfig_2.0.3 tools_4.4.2 +[49] htmltools_0.5.8.1</code></pre> </div> <div class="section level3"> <h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a> |