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Diffstat (limited to 'docs/dev/articles/web_only/compiled_models.html')
| -rw-r--r-- | docs/dev/articles/web_only/compiled_models.html | 25 |
1 files changed, 14 insertions, 11 deletions
diff --git a/docs/dev/articles/web_only/compiled_models.html b/docs/dev/articles/web_only/compiled_models.html index ade86bc5..e9d80420 100644 --- a/docs/dev/articles/web_only/compiled_models.html +++ b/docs/dev/articles/web_only/compiled_models.html @@ -34,7 +34,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../../index.html">mkin</a> - <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.0</span> + <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span> </span> </div> @@ -78,7 +78,10 @@ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a> </li> <li> - <a href="../../articles/web_only/benchmarks.html">Some benchmark timings</a> + <a href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a> + </li> + <li> + <a href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a> </li> </ul> </li> @@ -109,7 +112,7 @@ <h1 data-toc-skip>Performance benefit by using compiled model definitions in mkin</h1> <h4 data-toc-skip class="author">Johannes Ranke</h4> - <h4 data-toc-skip class="date">2022-11-01</h4> + <h4 data-toc-skip class="date">2022-11-24</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/compiled_models.rmd" class="external-link"><code>vignettes/web_only/compiled_models.rmd</code></a></small> <div class="hidden name"><code>compiled_models.rmd</code></div> @@ -167,10 +170,10 @@ <span> <span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="st">"R package rbenchmark is not available"</span><span class="op">)</span></span> <span><span class="op">}</span></span></code></pre></div> <pre><code><span><span class="co">## test replications relative elapsed</span></span> -<span><span class="co">## 4 analytical 1 1.000 0.186</span></span> -<span><span class="co">## 3 deSolve, compiled 1 1.656 0.308</span></span> -<span><span class="co">## 2 Eigenvalue based 1 2.102 0.391</span></span> -<span><span class="co">## 1 deSolve, not compiled 1 38.968 7.248</span></span></code></pre> +<span><span class="co">## 4 analytical 1 1.000 0.221</span></span> +<span><span class="co">## 3 deSolve, compiled 1 1.561 0.345</span></span> +<span><span class="co">## 2 Eigenvalue based 1 1.932 0.427</span></span> +<span><span class="co">## 1 deSolve, not compiled 1 33.629 7.432</span></span></code></pre> <p>We see that using the compiled model is by more than a factor of 10 faster than using deSolve without compiled code.</p> </div> <div class="section level2"> @@ -197,10 +200,10 @@ <span><span class="op">}</span></span></code></pre></div> <pre><code><span><span class="co">## Temporary DLL for differentials generated and loaded</span></span></code></pre> <pre><code><span><span class="co">## test replications relative elapsed</span></span> -<span><span class="co">## 2 deSolve, compiled 1 1.000 0.452</span></span> -<span><span class="co">## 1 deSolve, not compiled 1 29.431 13.303</span></span></code></pre> -<p>Here we get a performance benefit of a factor of 29 using the version of the differential equation model compiled from C code!</p> -<p>This vignette was built with mkin 1.2.0 on</p> +<span><span class="co">## 2 deSolve, compiled 1 1.000 0.482</span></span> +<span><span class="co">## 1 deSolve, not compiled 1 27.865 13.431</span></span></code></pre> +<p>Here we get a performance benefit of a factor of 28 using the version of the differential equation model compiled from C code!</p> +<p>This vignette was built with mkin 1.2.2 on</p> <pre><code><span><span class="co">## R version 4.2.2 (2022-10-31)</span></span> <span><span class="co">## Platform: x86_64-pc-linux-gnu (64-bit)</span></span> <span><span class="co">## Running under: Debian GNU/Linux 11 (bullseye)</span></span></code></pre> |