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-rw-r--r--docs/dev/reference/index.html54
1 files changed, 45 insertions, 9 deletions
diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html
index e038ef5c..092e35c8 100644
--- a/docs/dev/reference/index.html
+++ b/docs/dev/reference/index.html
@@ -71,7 +71,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.4</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.0</span>
</span>
</div>
@@ -175,7 +175,7 @@
</tr><tr>
<td>
- <p><code><a href="mmkin.html">mmkin()</a></code> </p>
+ <p><code><a href="mmkin.html">mmkin()</a></code> <code><a href="mmkin.html">print(<i>&lt;mmkin&gt;</i>)</a></code> </p>
</td>
<td><p>Fit one or more kinetic models with one or more state variables to one or
more datasets</p></td>
@@ -297,12 +297,6 @@ of an mmkin object</p></td>
<p><code><a href="AIC.mmkin.html">AIC(<i>&lt;mmkin&gt;</i>)</a></code> <code><a href="AIC.mmkin.html">BIC(<i>&lt;mmkin&gt;</i>)</a></code> </p>
</td>
<td><p>Calculate the AIC for a column of an mmkin object</p></td>
- </tr><tr>
-
- <td>
- <p><code><a href="print.mmkin.html">print(<i>&lt;mmkin&gt;</i>)</a></code> </p>
- </td>
- <td><p>Print method for mmkin objects</p></td>
</tr>
</tbody><tbody>
<tr>
@@ -331,6 +325,12 @@ of an mmkin object</p></td>
</tr><tr>
<td>
+ <p><code><a href="nlmixr.mmkin.html">nlmixr(<i>&lt;mmkin&gt;</i>)</a></code> <code><a href="nlmixr.mmkin.html">print(<i>&lt;nlmixr.mmkin&gt;</i>)</a></code> <code><a href="nlmixr.mmkin.html">nlmixr_model()</a></code> <code><a href="nlmixr.mmkin.html">nlmixr_data()</a></code> </p>
+ </td>
+ <td><p>Fit nonlinear mixed models using nlmixr</p></td>
+ </tr><tr>
+
+ <td>
<p><code><a href="plot.mixed.mmkin.html">plot(<i>&lt;mixed.mmkin&gt;</i>)</a></code> </p>
</td>
<td><p>Plot predictions from a fitted nonlinear mixed model obtained via an mmkin row object</p></td>
@@ -343,13 +343,19 @@ of an mmkin object</p></td>
</tr><tr>
<td>
+ <p><code><a href="summary.nlmixr.mmkin.html">summary(<i>&lt;nlmixr.mmkin&gt;</i>)</a></code> <code><a href="summary.nlmixr.mmkin.html">print(<i>&lt;summary.nlmixr.mmkin&gt;</i>)</a></code> </p>
+ </td>
+ <td><p>Summary method for class "nlmixr.mmkin"</p></td>
+ </tr><tr>
+
+ <td>
<p><code><a href="summary.saem.mmkin.html">summary(<i>&lt;saem.mmkin&gt;</i>)</a></code> <code><a href="summary.saem.mmkin.html">print(<i>&lt;summary.saem.mmkin&gt;</i>)</a></code> </p>
</td>
<td><p>Summary method for class "saem.mmkin"</p></td>
</tr><tr>
<td>
- <p><code><a href="nlme.html">nlme_function()</a></code> <code><a href="nlme.html">mean_degparms()</a></code> <code><a href="nlme.html">nlme_data()</a></code> </p>
+ <p><code><a href="nlme.html">nlme_function()</a></code> <code><a href="nlme.html">nlme_data()</a></code> </p>
</td>
<td><p>Helper functions to create nlme models from mmkin row objects</p></td>
</tr><tr>
@@ -364,6 +370,24 @@ of an mmkin object</p></td>
<p><code><a href="mixed.html">mixed()</a></code> <code><a href="mixed.html">print(<i>&lt;mixed.mmkin&gt;</i>)</a></code> </p>
</td>
<td><p>Create a mixed effects model from an mmkin row object</p></td>
+ </tr><tr>
+
+ <td>
+ <p><code><a href="reexports.html">reexports</a></code> </p>
+ </td>
+ <td><p>Objects exported from other packages</p></td>
+ </tr><tr>
+
+ <td>
+ <p><code><a href="intervals.saem.mmkin.html">intervals(<i>&lt;saem.mmkin&gt;</i>)</a></code> </p>
+ </td>
+ <td><p>Confidence intervals for parameters in saem.mmkin objects</p></td>
+ </tr><tr>
+
+ <td>
+ <p><code><a href="intervals.nlmixr.mmkin.html">intervals(<i>&lt;nlmixr.mmkin&gt;</i>)</a></code> </p>
+ </td>
+ <td><p>Confidence intervals for parameters in nlmixr.mmkin objects</p></td>
</tr>
</tbody><tbody>
<tr>
@@ -576,6 +600,12 @@ kinetic models fitted with mkinfit</p></td>
</tr><tr>
<td>
+ <p><code><a href="tffm0.html">tffm0()</a></code> <code><a href="tffm0.html">invtffm0()</a></code> </p>
+ </td>
+ <td><p>Transform formation fractions as in the first published mkin version</p></td>
+ </tr><tr>
+
+ <td>
<p><code><a href="logLik.mkinfit.html">logLik(<i>&lt;mkinfit&gt;</i>)</a></code> </p>
</td>
<td><p>Calculated the log-likelihood of a fitted mkinfit object</p></td>
@@ -612,6 +642,12 @@ kinetic models fitted with mkinfit</p></td>
</tr><tr>
<td>
+ <p><code><a href="mean_degparms.html">mean_degparms()</a></code> </p>
+ </td>
+ <td><p>Calculate mean degradation parameters for an mmkin row object</p></td>
+ </tr><tr>
+
+ <td>
<p><code><a href="create_deg_func.html">create_deg_func()</a></code> </p>
</td>
<td><p>Create degradation functions for known analytical solutions</p></td>

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