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-rw-r--r--docs/dev/reference/index.html51
1 files changed, 38 insertions, 13 deletions
diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html
index 5a0ec596..b6d2db20 100644
--- a/docs/dev/reference/index.html
+++ b/docs/dev/reference/index.html
@@ -17,13 +17,13 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.0</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav"><li>
- <a href="../reference/index.html">Functions and data</a>
+ <a href="../reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
@@ -34,6 +34,8 @@
<ul class="dropdown-menu" role="menu"><li>
<a href="../articles/mkin.html">Introduction to mkin</a>
</li>
+ <li class="divider">
+ <li class="dropdown-header">Example evaluations with (generalised) nonlinear least squares</li>
<li>
<a href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
@@ -41,22 +43,29 @@
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
- <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
</li>
+ <li class="divider">
+ <li class="dropdown-header">Example evaluations with hierarchical models (nonlinear mixed-effects models)</li>
<li>
- <a href="../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ <a href="../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ <a href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
- <a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ <a href="../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a>
</li>
<li>
- <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ <a href="../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ </li>
+ <li class="divider">
+ <li class="dropdown-header">Performance</li>
+ <li>
+ <a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
@@ -64,6 +73,14 @@
<li>
<a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
+ <li class="divider">
+ <li class="dropdown-header">Miscellaneous</li>
+ <li>
+ <a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ </li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul></li>
<li>
<a href="../news/index.html">News</a>
@@ -195,6 +212,10 @@ of an mmkin object</p></td>
<p class="section-desc"></p><p>Create and work with nonlinear hierarchical models</p>
</th>
</tr></tbody><tbody><tr><td>
+ <p><code><a href="hierarchical_kinetics.html">hierarchical_kinetics()</a></code> </p>
+ </td>
+ <td><p>Hierarchical kinetics template</p></td>
+ </tr><tr><td>
<p><code><a href="read_spreadsheet.html">read_spreadsheet()</a></code> </p>
</td>
<td><p>Read datasets and relevant meta information from a spreadsheet file</p></td>
@@ -268,9 +289,9 @@ degradation models and one or more error models</p></td>
<p class="section-desc"></p>
</th>
</tr></tbody><tbody><tr><td>
- <p><code><a href="focus_soil_moisture.html">focus_soil_moisture</a></code> </p>
+ <p><code><a href="ds_mixed.html">ds_mixed</a></code> <code><a href="ds_mixed.html">ds_sfo</a></code> <code><a href="ds_mixed.html">ds_fomc</a></code> <code><a href="ds_mixed.html">ds_dfop</a></code> <code><a href="ds_mixed.html">ds_hs</a></code> <code><a href="ds_mixed.html">ds_dfop_sfo</a></code> </p>
</td>
- <td><p>FOCUS default values for soil moisture contents at field capacity, MWHC and 1/3 bar</p></td>
+ <td><p>Synthetic data for hierarchical kinetic degradation models</p></td>
</tr><tr><td>
<p><code><a href="D24_2014.html">D24_2014</a></code> </p>
</td>
@@ -328,6 +349,10 @@ degradation models and one or more error models</p></td>
</td>
<td><p>Three experimental datasets from two water sediment systems and one soil</p></td>
</tr><tr><td>
+ <p><code><a href="focus_soil_moisture.html">focus_soil_moisture</a></code> </p>
+ </td>
+ <td><p>FOCUS default values for soil moisture contents at field capacity, MWHC and 1/3 bar</p></td>
+ </tr><tr><td>
<p><code><a href="mkinds.html">print(<i>&lt;mkinds&gt;</i>)</a></code> </p>
</td>
<td><p>A dataset class for mkin</p></td>
@@ -352,9 +377,9 @@ degradation models and one or more error models</p></td>
<p class="section-desc"></p>
</th>
</tr></tbody><tbody><tr><td>
- <p><code><a href="tex_listing.html">tex_listing()</a></code> </p>
+ <p><code><a href="summary_listing.html">summary_listing()</a></code> <code><a href="summary_listing.html">tex_listing()</a></code> <code><a href="summary_listing.html">html_listing()</a></code> </p>
</td>
- <td><p>Wrap the output of a summary function in tex listing environment</p></td>
+ <td><p>Display the output of a summary function according to the output format</p></td>
</tr><tr><td>
<p><code><a href="f_time_norm_focus.html">f_time_norm_focus()</a></code> </p>
</td>
@@ -489,7 +514,7 @@ kinetic models fitted with mkinfit</p></td>
</div>
<div class="pkgdown">
- <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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