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+variables from an mkinfit object. A combined plot of the fitted model and
+the residuals can be obtained using plot.mkinfit using the
+argument show_residuals = TRUE."><meta property="og:description" content="This function plots the residuals for the specified subset of the observed
+variables from an mkinfit object. A combined plot of the fitted model and
+the residuals can be obtained using plot.mkinfit using the
+argument show_residuals = TRUE."><meta name="robots" content="noindex"></head><body>
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+ <li><a class="dropdown-item" href="../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a></li>
+ <li><a class="dropdown-item" href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a></li>
+ <li><a class="dropdown-item" href="../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a></li>
+ <li><a class="dropdown-item" href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a></li>
+ <li><a class="dropdown-item" href="../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a></li>
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+
+ <h1>Function to plot residuals stored in an mkin object</h1>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/mkinresplot.R" class="external-link"><code>R/mkinresplot.R</code></a></small>
+ <div class="d-none name"><code>mkinresplot.Rd</code></div>
+ </div>
+
+ <div class="ref-description section level2">
+ <p>This function plots the residuals for the specified subset of the observed
+variables from an mkinfit object. A combined plot of the fitted model and
+the residuals can be obtained using <code><a href="plot.mkinfit.html">plot.mkinfit</a></code> using the
+argument <code>show_residuals = TRUE</code>.</p>
+ </div>
+
+ <div class="section level2">
+ <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">mkinresplot</span><span class="op">(</span></span>
+<span> <span class="va">object</span>,</span>
+<span> obs_vars <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">object</span><span class="op">$</span><span class="va">mkinmod</span><span class="op">$</span><span class="va">map</span><span class="op">)</span>,</span>
+<span> xlim <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">1.1</span> <span class="op">*</span> <span class="fu"><a href="https://rdrr.io/r/base/Extremes.html" class="external-link">max</a></span><span class="op">(</span><span class="va">object</span><span class="op">$</span><span class="va">data</span><span class="op">$</span><span class="va">time</span><span class="op">)</span><span class="op">)</span>,</span>
+<span> standardized <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span> xlab <span class="op">=</span> <span class="st">"Time"</span>,</span>
+<span> ylab <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/ifelse.html" class="external-link">ifelse</a></span><span class="op">(</span><span class="va">standardized</span>, <span class="st">"Standardized residual"</span>, <span class="st">"Residual"</span><span class="op">)</span>,</span>
+<span> maxabs <span class="op">=</span> <span class="st">"auto"</span>,</span>
+<span> legend <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span> lpos <span class="op">=</span> <span class="st">"topright"</span>,</span>
+<span> col_obs <span class="op">=</span> <span class="st">"auto"</span>,</span>
+<span> pch_obs <span class="op">=</span> <span class="st">"auto"</span>,</span>
+<span> frame <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span> <span class="va">...</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+ </div>
+
+ <div class="section level2">
+ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
+
+
+<dl><dt id="arg-object">object<a class="anchor" aria-label="anchor" href="#arg-object"></a></dt>
+<dd><p>A fit represented in an <code><a href="mkinfit.html">mkinfit</a></code> object.</p></dd>
+
+
+<dt id="arg-obs-vars">obs_vars<a class="anchor" aria-label="anchor" href="#arg-obs-vars"></a></dt>
+<dd><p>A character vector of names of the observed variables for
+which residuals should be plotted. Defaults to all observed variables in
+the model</p></dd>
+
+
+<dt id="arg-xlim">xlim<a class="anchor" aria-label="anchor" href="#arg-xlim"></a></dt>
+<dd><p>plot range in x direction.</p></dd>
+
+
+<dt id="arg-standardized">standardized<a class="anchor" aria-label="anchor" href="#arg-standardized"></a></dt>
+<dd><p>Should the residuals be standardized by dividing by the
+standard deviation given by the error model of the fit?</p></dd>
+
+
+<dt id="arg-xlab">xlab<a class="anchor" aria-label="anchor" href="#arg-xlab"></a></dt>
+<dd><p>Label for the x axis.</p></dd>
+
+
+<dt id="arg-ylab">ylab<a class="anchor" aria-label="anchor" href="#arg-ylab"></a></dt>
+<dd><p>Label for the y axis.</p></dd>
+
+
+<dt id="arg-maxabs">maxabs<a class="anchor" aria-label="anchor" href="#arg-maxabs"></a></dt>
+<dd><p>Maximum absolute value of the residuals. This is used for the
+scaling of the y axis and defaults to "auto".</p></dd>
+
+
+<dt id="arg-legend">legend<a class="anchor" aria-label="anchor" href="#arg-legend"></a></dt>
+<dd><p>Should a legend be plotted?</p></dd>
+
+
+<dt id="arg-lpos">lpos<a class="anchor" aria-label="anchor" href="#arg-lpos"></a></dt>
+<dd><p>Where should the legend be placed? Default is "topright". Will
+be passed on to <code><a href="https://rdrr.io/r/graphics/legend.html" class="external-link">legend</a></code>.</p></dd>
+
+
+<dt id="arg-col-obs">col_obs<a class="anchor" aria-label="anchor" href="#arg-col-obs"></a></dt>
+<dd><p>Colors for the observed variables.</p></dd>
+
+
+<dt id="arg-pch-obs">pch_obs<a class="anchor" aria-label="anchor" href="#arg-pch-obs"></a></dt>
+<dd><p>Symbols to be used for the observed variables.</p></dd>
+
+
+<dt id="arg-frame">frame<a class="anchor" aria-label="anchor" href="#arg-frame"></a></dt>
+<dd><p>Should a frame be drawn around the plots?</p></dd>
+
+
+<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
+<dd><p>further arguments passed to <code><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></code>.</p></dd>
+
+</dl></div>
+ <div class="section level2">
+ <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
+ <p>Nothing is returned by this function, as it is called for its side
+effect, namely to produce a plot.</p>
+ </div>
+ <div class="section level2">
+ <h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2>
+ <div class="dont-index"><p><code><a href="mkinplot.html">mkinplot</a></code>, for a way to plot the data and the fitted
+lines of the mkinfit object, and <code><a href="plot.mkinfit.html">plot_res</a></code> for a function
+combining the plot of the fit and the residual plot.</p></div>
+ </div>
+ <div class="section level2">
+ <h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2>
+ <p>Johannes Ranke and Katrin Lindenberger</p>
+ </div>
+
+ <div class="section level2">
+ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="va">model</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinmod.html">mkinmod</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"m1"</span><span class="op">)</span>, m1 <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Temporary DLL for differentials generated and loaded</span>
+<span class="r-in"><span><span class="va">fit</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="va">model</span>, <span class="va">FOCUS_2006_D</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Observations with value of zero were removed from the data</span>
+<span class="r-in"><span><span class="fu">mkinresplot</span><span class="op">(</span><span class="va">fit</span>, <span class="st">"m1"</span><span class="op">)</span></span></span>
+<span class="r-plt img"><img src="mkinresplot-1.png" alt="" width="700" height="433"></span>
+<span class="r-in"><span></span></span>
+</code></pre></div>
+ </div>
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