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-rw-r--r--docs/reference/mkinerrmin.html88
1 files changed, 54 insertions, 34 deletions
diff --git a/docs/reference/mkinerrmin.html b/docs/reference/mkinerrmin.html
index cd9faf1a..2e1833da 100644
--- a/docs/reference/mkinerrmin.html
+++ b/docs/reference/mkinerrmin.html
@@ -6,14 +6,14 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<title>mkinerrmin. mkin</title>
+<title>
+ — mkinerrmin • mkin</title>
<!-- jquery -->
<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>
-
<!-- Bootstrap -->
-<link href="https://maxcdn.bootstrapcdn.com/bootswatch/3.3.7/cerulean/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous">
+<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
<!-- Font Awesome icons -->
@@ -22,6 +22,7 @@
<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
+<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
<!-- mathjax -->
@@ -34,10 +35,9 @@
</head>
<body>
- <div class="container">
+ <div class="container template-reference-topic">
<header>
-
-<div class="navbar navbar-default navbar-fixed-top" role="navigation">
+ <div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
@@ -56,6 +56,7 @@
<a href="../reference/index.html">Reference</a>
</li>
</ul>
+
<ul class="nav navbar-nav navbar-right">
<li>
<a href="https://github.com/jranke/mkin">
@@ -67,16 +68,17 @@
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
+
</header>
- <div class="page-header">
- <h1>
+ <div class="row">
+ <div class="col-md-9 contents">
+ <div class="page-header">
+ <h1>
</h1>
-</div>
+ </div>
-<div class="row">
- <div class="col-md-9">
<p>This function uses <code>optimize</code> in order to iteratively find the
smallest relative error still resulting in passing the chi-squared test
@@ -85,11 +87,11 @@ as defined in the FOCUS kinetics report from 2006.</p>
<pre><span class='fu'>mkinerrmin</span>(<span class='no'>fit</span>, <span class='kw'>alpha</span> <span class='kw'>=</span> <span class='fl'>0.05</span>)</pre>
- <h2>Arguments</h2>
+ <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
<dl class="dl-horizontal">
<dt>fit</dt>
<dd>
- an object of class <code>mkinfit</code>.
+ an object of class <code><a href='mkinfit.html'>mkinfit</a></code>.
</dd>
<dt>alpha</dt>
<dd>
@@ -97,52 +99,70 @@ as defined in the FOCUS kinetics report from 2006.</p>
</dd>
</dl>
- <div class="Value">
- <h2>Value</h2>
+ <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
- <p>A dataframe with the following components:</p>
- <p>The dataframe has one row for the total dataset and one further row for
+ <p>A dataframe with the following components:</p>
+ <p>The dataframe has one row for the total dataset and one further row for
each observed state variable in the model.</p>
- </div>
-
- <div class="Details">
- <h2>Details</h2>
-
- <p>This function is used internally by <code>summary.mkinfit</code>.</p>
- </div>
+
+ <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
- <div class="References">
- <h2>References</h2>
+ <p>This function is used internally by <code><a href='summary.mkinfit.html'>summary.mkinfit</a></code>.</p>
+
+ <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
- <p>FOCUS (2006) &#8220;Guidance Document on Estimating Persistence and
+ <p>FOCUS (2006) &#8220;Guidance Document on Estimating Persistence and
Degradation Kinetics from Environmental Fate Studies on Pesticides in EU
Registration&#8221; Report of the FOCUS Work Group on Degradation Kinetics,
EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,
<a href = 'http://focus.jrc.ec.europa.eu/dk'>http://focus.jrc.ec.europa.eu/dk</a></p>
- </div>
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'><span class='no'>SFO_SFO</span> <span class='kw'>=</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>),
+
+ <h2 class="hasAnchor" id="examples">
+ <a class="anchor" href="#examples"></a>
+ Examples
+ </h2>
+ <pre class="examples"><div class='input'><span class='no'>SFO_SFO</span> <span class='kw'>=</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>),
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>),
<span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output'><strong class='text-info'>Successfully compiled differential equation model from auto-generated C code.</strong></div><div class='input'>
-<span class='no'>fit_FOCUS_D</span> <span class='kw'>=</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+<span class='no'>fit_FOCUS_D</span> <span class='kw'>=</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'>round</span>(<span class='fu'>mkinerrmin</span>(<span class='no'>fit_FOCUS_D</span>), <span class='fl'>4</span>)</div><div class='output co'>#&gt; err.min n.optim df
#&gt; All data 0.0640 4 15
#&gt; parent 0.0646 2 7
#&gt; m1 0.0469 2 8
-#&gt; </div><div class='input'><span class='no'>fit_FOCUS_E</span> <span class='kw'>=</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_E</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+#&gt; </div><div class='input'><span class='no'>fit_FOCUS_E</span> <span class='kw'>=</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_E</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'>round</span>(<span class='fu'>mkinerrmin</span>(<span class='no'>fit_FOCUS_E</span>), <span class='fl'>4</span>)</div><div class='output co'>#&gt; err.min n.optim df
#&gt; All data 0.1544 4 13
#&gt; parent 0.1659 2 7
#&gt; m1 0.1095 2 6
#&gt; </div></pre>
</div>
- <div class="col-md-3">
+ <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
+ <h2>Contents</h2>
+ <ul class="nav nav-pills nav-stacked">
+ <li><a href="#arguments">Arguments</a></li>
+
+ <li><a href="#value">Value</a></li>
+
+ <li><a href="#details">Details</a></li>
+
+ <li><a href="#references">References</a></li>
+
+ <li><a href="#examples">Examples</a></li>
+ </ul>
+
</div>
</div>
<footer>
- <p>Built by <a href="http://hadley.github.io/pkgdown/">pkgdown</a>. Styled with <a href="http://getbootstrap.com">Bootstrap 3</a>.</p>
+ <div class="copyright">
+ <p>Developed by Johannes Ranke, Eurofins Regulatory AG.</p>
+</div>
+
+<div class="pkgdown">
+ <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
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+
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