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-rw-r--r--docs/reference/mkinpredict.html56
1 files changed, 28 insertions, 28 deletions
diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html
index 56c1ed27..4b75603f 100644
--- a/docs/reference/mkinpredict.html
+++ b/docs/reference/mkinpredict.html
@@ -328,7 +328,7 @@
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>),
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#&gt; time parent m1
#&gt; 201 20 4.978707 27.46227</div><div class='output co'>#&gt; User System verstrichen
-#&gt; 0.004 0.000 0.003 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(
+#&gt; 0.003 0.000 0.003 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>(
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k_parent_m1</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>k_parent_sink</span> <span class='kw'>=</span> <span class='fl'>0.1</span>, <span class='kw'>k_m1_sink</span> <span class='kw'>=</span> <span class='fl'>0.01</span>),
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>),
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#&gt; time parent m1
@@ -338,34 +338,34 @@
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>),
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>, <span class='kw'>use_compiled</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#&gt; time parent m1
#&gt; 201 20 4.978707 27.46227</div><div class='output co'>#&gt; User System verstrichen
-#&gt; 0.04 0.00 0.04 </div><div class='input'>
+#&gt; 0.021 0.000 0.021 </div><div class='input'>
</div><div class='input'> <span class='co'># Predict from a fitted model</span>
- <span class='no'>f</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_C</span>)</div><div class='output co'>#&gt; Negative log-likelihood at call 1: 552.5739
-#&gt; Negative log-likelihood at call 3: 552.5739
-#&gt; Negative log-likelihood at call 4: 552.5739
-#&gt; Negative log-likelihood at call 6: 279.9345
-#&gt; Negative log-likelihood at call 7: 279.9344
-#&gt; Negative log-likelihood at call 8: 279.9294
-#&gt; Negative log-likelihood at call 9: 279.9294
-#&gt; Negative log-likelihood at call 12: 200.3629
-#&gt; Negative log-likelihood at call 13: 200.3629
-#&gt; Negative log-likelihood at call 18: 197.9039
-#&gt; Negative log-likelihood at call 25: 196.6754
-#&gt; Negative log-likelihood at call 27: 196.6754
-#&gt; Negative log-likelihood at call 32: 196.5742
-#&gt; Negative log-likelihood at call 33: 196.5742
-#&gt; Negative log-likelihood at call 34: 196.5742
-#&gt; Negative log-likelihood at call 38: 196.5361
-#&gt; Negative log-likelihood at call 40: 196.5361
-#&gt; Negative log-likelihood at call 44: 196.5336
-#&gt; Negative log-likelihood at call 45: 196.5336
-#&gt; Negative log-likelihood at call 50: 196.5334
-#&gt; Negative log-likelihood at call 51: 196.5334
-#&gt; Negative log-likelihood at call 52: 196.5334
-#&gt; Negative log-likelihood at call 56: 196.5334
-#&gt; Negative log-likelihood at call 58: 196.5334
-#&gt; Negative log-likelihood at call 59: 196.5334
-#&gt; Negative log-likelihood at call 65: 196.5334
+ <span class='no'>f</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_C</span>)</div><div class='output co'>#&gt; Sum of squared residuals at call 1: 552.5739
+#&gt; Sum of squared residuals at call 3: 552.5739
+#&gt; Sum of squared residuals at call 4: 552.5739
+#&gt; Sum of squared residuals at call 6: 279.9345
+#&gt; Sum of squared residuals at call 7: 279.9344
+#&gt; Sum of squared residuals at call 8: 279.9294
+#&gt; Sum of squared residuals at call 9: 279.9294
+#&gt; Sum of squared residuals at call 12: 200.3629
+#&gt; Sum of squared residuals at call 13: 200.3629
+#&gt; Sum of squared residuals at call 18: 197.9039
+#&gt; Sum of squared residuals at call 25: 196.6754
+#&gt; Sum of squared residuals at call 27: 196.6754
+#&gt; Sum of squared residuals at call 32: 196.5742
+#&gt; Sum of squared residuals at call 33: 196.5742
+#&gt; Sum of squared residuals at call 34: 196.5742
+#&gt; Sum of squared residuals at call 38: 196.5361
+#&gt; Sum of squared residuals at call 40: 196.5361
+#&gt; Sum of squared residuals at call 44: 196.5336
+#&gt; Sum of squared residuals at call 45: 196.5336
+#&gt; Sum of squared residuals at call 50: 196.5334
+#&gt; Sum of squared residuals at call 51: 196.5334
+#&gt; Sum of squared residuals at call 52: 196.5334
+#&gt; Sum of squared residuals at call 56: 196.5334
+#&gt; Sum of squared residuals at call 58: 196.5334
+#&gt; Sum of squared residuals at call 59: 196.5334
+#&gt; Sum of squared residuals at call 65: 196.5334
#&gt; Negative log-likelihood at call 75: 26.64668
#&gt; Negative log-likelihood at call 103: 26.64668
#&gt; Optimisation successfully terminated.</div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/utils/topics/head'>head</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>f</span>))</div><div class='output co'>#&gt; time parent m1

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