aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/mkinsub.html
diff options
context:
space:
mode:
Diffstat (limited to 'docs/reference/mkinsub.html')
-rw-r--r--docs/reference/mkinsub.html45
1 files changed, 22 insertions, 23 deletions
diff --git a/docs/reference/mkinsub.html b/docs/reference/mkinsub.html
index 1523138c..e38c153c 100644
--- a/docs/reference/mkinsub.html
+++ b/docs/reference/mkinsub.html
@@ -8,11 +8,13 @@
<title>Function to set up a kinetic submodel for one state variable — mkinsub • mkin</title>
+
<!-- jquery -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
<!-- Bootstrap -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha256-916EbMg70RQy9LHiGkXzG8hSg9EdNy97GazNG/aiY1w=" crossorigin="anonymous" />
+
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
<!-- Font Awesome icons -->
@@ -32,14 +34,15 @@
-<meta property="og:title" content="Function to set up a kinetic submodel for one state variable — mkinsub" />
+<meta property="og:title" content="Function to set up a kinetic submodel for one state variable — mkinsub" />
<meta property="og:description" content="This is a convenience function to set up the lists used as arguments for
- mkinmod." />
+mkinmod." />
<meta name="twitter:card" content="summary" />
+
<!-- mathjax -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
@@ -110,7 +113,6 @@
<a href="../news/index.html">News</a>
</li>
</ul>
-
<ul class="nav navbar-nav navbar-right">
</ul>
@@ -132,48 +134,46 @@
</div>
<div class="ref-description">
-
<p>This is a convenience function to set up the lists used as arguments for
- <code><a href='mkinmod.html'>mkinmod</a></code>.</p>
-
+<code><a href='mkinmod.html'>mkinmod</a></code>.</p>
</div>
<pre class="usage"><span class='fu'>mkinsub</span>(<span class='no'>submodel</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>sink</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='fl'>NA</span>)</pre>
-
+
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>submodel</th>
- <td><p>Character vector of length one to specify the submodel type. See
- <code><a href='mkinmod.html'>mkinmod</a></code> for the list of allowed submodel names.</p></td>
+ <td><p>Character vector of length one to specify the submodel type.
+See <code><a href='mkinmod.html'>mkinmod</a></code> for the list of allowed submodel names.</p></td>
</tr>
<tr>
<th>to</th>
- <td><p>Vector of the names of the state variable to which a transformation
- shall be included in the model.</p></td>
+ <td><p>Vector of the names of the state variable to which a
+transformation shall be included in the model.</p></td>
</tr>
<tr>
<th>sink</th>
- <td><p>Should a pathway to sink be included in the model in addition to the
- pathways to other state variables?</p></td>
+ <td><p>Should a pathway to sink be included in the model in addition to
+the pathways to other state variables?</p></td>
</tr>
<tr>
<th>full_name</th>
- <td><p>An optional name to be used e.g. for plotting fits performed with the model.
- You can use non-ASCII characters here, but then your R code will not be
- portable, <em>i.e.</em> may produce unintended plot results on other
- operating systems or system configurations.</p></td>
+ <td><p>An optional name to be used e.g. for plotting fits
+performed with the model. You can use non-ASCII characters here, but then
+your R code will not be portable, <em>i.e.</em> may produce unintended plot
+results on other operating systems or system configurations.</p></td>
</tr>
</table>
-
+
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>A list for use with <code><a href='mkinmod.html'>mkinmod</a></code>.</p>
-
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='co'># One parent compound, one metabolite, both single first order.</span>
+ <pre class="examples"><div class='input'>
+<span class='co'># One parent compound, one metabolite, both single first order.</span>
<span class='no'>SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(
<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>),
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
@@ -184,15 +184,14 @@
<span class='co'># Now supplying full names</span>
<span class='no'>SFO_SFO.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(
<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Test compound"</span>),
- <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Metabolite M1"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div></pre>
+ <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Metabolite M1"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
+</div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
-
<li><a href="#value">Value</a></li>
-
<li><a href="#examples">Examples</a></li>
</ul>

Contact - Imprint