aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/nlme.mmkin.html
diff options
context:
space:
mode:
Diffstat (limited to 'docs/reference/nlme.mmkin.html')
-rw-r--r--docs/reference/nlme.mmkin.html152
1 files changed, 71 insertions, 81 deletions
diff --git a/docs/reference/nlme.mmkin.html b/docs/reference/nlme.mmkin.html
index 33cc9164..4e5a86cb 100644
--- a/docs/reference/nlme.mmkin.html
+++ b/docs/reference/nlme.mmkin.html
@@ -10,23 +10,27 @@
<!-- jquery -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
<!-- Bootstrap -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha256-916EbMg70RQy9LHiGkXzG8hSg9EdNy97GazNG/aiY1w=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous" />
-<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
+
+<!-- bootstrap-toc -->
+<link rel="stylesheet" href="../bootstrap-toc.css">
+<script src="../bootstrap-toc.js"></script>
<!-- Font Awesome icons -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
<!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
<!-- headroom.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
@@ -39,7 +43,6 @@
<meta property="og:description" content="This functions sets up a nonlinear mixed effects model for an mmkin row
object. An mmkin row object is essentially a list of mkinfit objects that
have been obtained by fitting the same model to a list of datasets." />
-<meta name="twitter:card" content="summary" />
@@ -57,7 +60,7 @@ have been obtained by fitting the same model to a list of datasets." />
</head>
- <body>
+ <body data-spy="scroll" data-target="#toc">
<div class="container template-reference-topic">
<header>
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
@@ -71,7 +74,7 @@ have been obtained by fitting the same model to a list of datasets." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.10</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.1</span>
</span>
</div>
@@ -115,7 +118,12 @@ have been obtained by fitting the same model to a list of datasets." />
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
-
+ <li>
+ <a href="http://github.com/jranke/mkin/">
+ <span class="fab fa fab fa-github fa-lg"></span>
+
+ </a>
+</li>
</ul>
</div><!--/.nav-collapse -->
@@ -130,7 +138,7 @@ have been obtained by fitting the same model to a list of datasets." />
<div class="col-md-9 contents">
<div class="page-header">
<h1>Create an nlme model for an mmkin row object</h1>
-
+ <small class="dont-index">Source: <a href='http://github.com/jranke/mkin/blob/master/R/nlme.mmkin.R'><code>R/nlme.mmkin.R</code></a></small>
<div class="hidden name"><code>nlme.mmkin.Rd</code></div>
</div>
@@ -243,7 +251,7 @@ parameters taken from the mmkin object are used</p></td>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>Upon success, a fitted nlme.mmkin object, which is an nlme object
- with additional elements</p>
+with additional elements</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p><code><a href='nlme.html'>nlme_function</a></code></p></div>
@@ -309,142 +317,124 @@ parameters taken from the mmkin object are used</p></td>
<span class='st'>"FOMC-SFO"</span> <span class='kw'>=</span> <span class='no'>m_fomc_sfo</span>,
<span class='st'>"DFOP-SFO"</span> <span class='kw'>=</span> <span class='no'>m_dfop_sfo</span>),
<span class='no'>ds_2</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
- <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_2</span>[<span class='st'>"SFO-SFO"</span>, <span class='fl'>3</span>:<span class='fl'>4</span>]) <span class='co'># Separate fits for datasets 3 and 4</span></div><div class='img'><img src='nlme.mmkin-1.png' alt='' width='700' height='433' /></div><div class='input'>
+ <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>f_2</span>[<span class='st'>"SFO-SFO"</span>, <span class='fl'>3</span>:<span class='fl'>4</span>]) <span class='co'># Separate fits for datasets 3 and 4</span></div><div class='img'><img src='nlme.mmkin-1.png' alt='' width='700' height='433' /></div><div class='input'>
<span class='no'>f_nlme_sfo_sfo</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/pkg/nlme/man/nlme.html'>nlme</a></span>(<span class='no'>f_2</span>[<span class='st'>"SFO-SFO"</span>, ])
<span class='co'># plot(f_nlme_sfo_sfo) # not feasible with pkgdown figures</span>
- <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_nlme_sfo_sfo</span>, <span class='fl'>3</span>:<span class='fl'>4</span>) <span class='co'># Global mixed model: Fits for datasets 3 and 4</span></div><div class='img'><img src='nlme.mmkin-2.png' alt='' width='700' height='433' /></div><div class='input'>
+ <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>f_nlme_sfo_sfo</span>, <span class='fl'>3</span>:<span class='fl'>4</span>) <span class='co'># Global mixed model: Fits for datasets 3 and 4</span></div><div class='img'><img src='nlme.mmkin-2.png' alt='' width='700' height='433' /></div><div class='input'>
<span class='co'># With formation fractions</span>
<span class='no'>f_nlme_sfo_sfo_ff</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/pkg/nlme/man/nlme.html'>nlme</a></span>(<span class='no'>f_2</span>[<span class='st'>"SFO-SFO-ff"</span>, ])
- <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_nlme_sfo_sfo_ff</span>, <span class='fl'>3</span>:<span class='fl'>4</span>) <span class='co'># chi2 different due to different df attribution</span></div><div class='img'><img src='nlme.mmkin-3.png' alt='' width='700' height='433' /></div><div class='input'>
+ <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>f_nlme_sfo_sfo_ff</span>, <span class='fl'>3</span>:<span class='fl'>4</span>) <span class='co'># chi2 different due to different df attribution</span></div><div class='img'><img src='nlme.mmkin-3.png' alt='' width='700' height='433' /></div><div class='input'>
<span class='co'># For more parameters, we need to increase pnlsMaxIter and the tolerance</span>
<span class='co'># to get convergence</span>
<span class='no'>f_nlme_fomc_sfo</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/pkg/nlme/man/nlme.html'>nlme</a></span>(<span class='no'>f_2</span>[<span class='st'>"FOMC-SFO"</span>, ],
<span class='kw'>control</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(<span class='kw'>pnlsMaxIter</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>tolerance</span> <span class='kw'>=</span> <span class='fl'>1e-4</span>), <span class='kw'>verbose</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt;
#&gt; **Iteration 1
-#&gt; LME step: Loglik: -394.1603, nlminb iterations: 2
+#&gt; LME step: Loglik: -394.1603, nlminb iterations: 3
#&gt; reStruct parameters:
#&gt; ds1 ds2 ds3 ds4 ds5
-#&gt; -0.2079984 0.8563873 1.7454146 1.0917723 1.2756924
+#&gt; -0.2079793 0.8563830 1.7454105 1.0917354 1.2756825
#&gt; Beginning PNLS step: .. completed fit_nlme() step.
-#&gt; PNLS step: RSS = 643.8786
-#&gt; fixed effects: 94.17379 -5.473199 -0.6970239 -0.2025094 2.103883
+#&gt; PNLS step: RSS = 643.8803
+#&gt; fixed effects: 94.17379 -5.473193 -0.6970236 -0.2025091 2.103883
#&gt; iterations: 100
#&gt; Convergence crit. (must all become &lt;= tolerance = 0.0001):
#&gt; fixed reStruct
-#&gt; 0.7865373 0.1448077
+#&gt; 0.7960134 0.1447728
#&gt;
#&gt; **Iteration 2
#&gt; LME step: Loglik: -396.3824, nlminb iterations: 7
#&gt; reStruct parameters:
#&gt; ds1 ds2 ds3 ds4 ds5
-#&gt; -1.712408e-01 -2.680989e-05 1.842119e+00 1.073975e+00 1.322924e+00
+#&gt; -1.712404e-01 -2.432655e-05 1.842120e+00 1.073975e+00 1.322925e+00
#&gt; Beginning PNLS step: .. completed fit_nlme() step.
-#&gt; PNLS step: RSS = 643.8022
-#&gt; fixed effects: 94.17385 -5.473491 -0.6970405 -0.202514 2.103871
+#&gt; PNLS step: RSS = 643.8035
+#&gt; fixed effects: 94.17385 -5.473487 -0.6970404 -0.2025137 2.103871
#&gt; iterations: 100
#&gt; Convergence crit. (must all become &lt;= tolerance = 0.0001):
#&gt; fixed reStruct
-#&gt; 5.341904e-05 1.227073e-03
+#&gt; 5.382757e-05 1.236667e-03
#&gt;
#&gt; **Iteration 3
#&gt; LME step: Loglik: -396.3825, nlminb iterations: 7
#&gt; reStruct parameters:
#&gt; ds1 ds2 ds3 ds4 ds5
-#&gt; -0.1712484347 -0.0001513555 1.8420964843 1.0739800649 1.3229176990
+#&gt; -0.1712499044 -0.0001499831 1.8420971364 1.0739799123 1.3229167796
#&gt; Beginning PNLS step: .. completed fit_nlme() step.
-#&gt; PNLS step: RSS = 643.7947
-#&gt; fixed effects: 94.17386 -5.473522 -0.6970423 -0.2025142 2.10387
+#&gt; PNLS step: RSS = 643.7948
+#&gt; fixed effects: 94.17386 -5.473521 -0.6970422 -0.2025144 2.10387
#&gt; iterations: 100
#&gt; Convergence crit. (must all become &lt;= tolerance = 0.0001):
#&gt; fixed reStruct
-#&gt; 5.568186e-06 1.276609e-04
+#&gt; 6.072817e-06 1.400857e-04
#&gt;
#&gt; **Iteration 4
#&gt; LME step: Loglik: -396.3825, nlminb iterations: 7
#&gt; reStruct parameters:
-#&gt; ds1 ds2 ds3 ds4 ds5
-#&gt; -0.171251200 -0.000164506 1.842095097 1.073980200 1.322916184
+#&gt; ds1 ds2 ds3 ds4 ds5
+#&gt; -0.1712529502 -0.0001641277 1.8420957542 1.0739797181 1.3229173076
#&gt; Beginning PNLS step: .. completed fit_nlme() step.
-#&gt; PNLS step: RSS = 643.7934
+#&gt; PNLS step: RSS = 643.7936
#&gt; fixed effects: 94.17386 -5.473526 -0.6970426 -0.2025146 2.103869
#&gt; iterations: 100
#&gt; Convergence crit. (must all become &lt;= tolerance = 0.0001):
#&gt; fixed reStruct
-#&gt; 2.332100e-06 1.979007e-05 </div><div class='input'> <span class='no'>f_nlme_dfop_sfo</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/pkg/nlme/man/nlme.html'>nlme</a></span>(<span class='no'>f_2</span>[<span class='st'>"DFOP-SFO"</span>, ],
+#&gt; 1.027451e-06 2.275704e-05 </div><div class='input'> <span class='no'>f_nlme_dfop_sfo</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/pkg/nlme/man/nlme.html'>nlme</a></span>(<span class='no'>f_2</span>[<span class='st'>"DFOP-SFO"</span>, ],
<span class='kw'>control</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(<span class='kw'>pnlsMaxIter</span> <span class='kw'>=</span> <span class='fl'>120</span>, <span class='kw'>tolerance</span> <span class='kw'>=</span> <span class='fl'>5e-4</span>), <span class='kw'>verbose</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt;
#&gt; **Iteration 1
-#&gt; LME step: Loglik: -404.9591, nlminb iterations: 1
+#&gt; LME step: Loglik: -404.9582, nlminb iterations: 1
#&gt; reStruct parameters:
#&gt; ds1 ds2 ds3 ds4 ds5 ds6
-#&gt; -0.4114594 0.9798456 1.6990016 0.7293119 0.3353829 1.7112922
+#&gt; -0.4114355 0.9798697 1.6990037 0.7293315 0.3354323 1.7113046
#&gt; Beginning PNLS step: .. completed fit_nlme() step.
-#&gt; PNLS step: RSS = 630.391
-#&gt; fixed effects: 93.82265 -5.455841 -0.6788837 -1.862191 -4.199654 0.05531046
+#&gt; PNLS step: RSS = 630.3644
+#&gt; fixed effects: 93.82269 -5.455991 -0.6788957 -1.862196 -4.199671 0.05532828
#&gt; iterations: 120
#&gt; Convergence crit. (must all become &lt;= tolerance = 0.0005):
#&gt; fixed reStruct
-#&gt; 0.7872619 0.5811683
+#&gt; 0.7885368 0.5822683
#&gt;
#&gt; **Iteration 2
#&gt; LME step: Loglik: -407.7755, nlminb iterations: 11
#&gt; reStruct parameters:
#&gt; ds1 ds2 ds3 ds4 ds5 ds6
-#&gt; -0.371222832 0.003084754 1.789952290 0.724634064 0.301559136 1.754244638
-#&gt; Beginning PNLS step: .. completed fit_nlme() step.
-#&gt; PNLS step: RSS = 630.359
-#&gt; fixed effects: 93.82269 -5.456014 -0.6788967 -1.862202 -4.199678 0.05534118
-#&gt; iterations: 120
-#&gt; Convergence crit. (must all become &lt;= tolerance = 0.0005):
-#&gt; fixed reStruct
-#&gt; 0.0005550885 0.0007749418
-#&gt;
-#&gt; **Iteration 3
-#&gt; LME step: Loglik: -407.7756, nlminb iterations: 11
-#&gt; reStruct parameters:
-#&gt; ds1 ds2 ds3 ds4 ds5 ds6
-#&gt; -0.371217033 0.003064156 1.789935045 0.724683005 0.301622307 1.754234135
+#&gt; -0.371224133 0.003056179 1.789939402 0.724671158 0.301602977 1.754200729
#&gt; Beginning PNLS step: .. completed fit_nlme() step.
-#&gt; PNLS step: RSS = 630.358
-#&gt; fixed effects: 93.82269 -5.456017 -0.6788969 -1.862197 -4.199677 0.05532978
+#&gt; PNLS step: RSS = 630.3633
+#&gt; fixed effects: 93.82269 -5.455992 -0.6788958 -1.862196 -4.199671 0.05532831
#&gt; iterations: 120
#&gt; Convergence crit. (must all become &lt;= tolerance = 0.0005):
#&gt; fixed reStruct
-#&gt; 2.059533e-04 4.860085e-05 </div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_2</span>[<span class='st'>"FOMC-SFO"</span>, <span class='fl'>3</span>:<span class='fl'>4</span>])</div><div class='img'><img src='nlme.mmkin-4.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_nlme_fomc_sfo</span>, <span class='fl'>3</span>:<span class='fl'>4</span>)</div><div class='img'><img src='nlme.mmkin-5.png' alt='' width='700' height='433' /></div><div class='input'>
- <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_2</span>[<span class='st'>"DFOP-SFO"</span>, <span class='fl'>3</span>:<span class='fl'>4</span>])</div><div class='img'><img src='nlme.mmkin-6.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_nlme_dfop_sfo</span>, <span class='fl'>3</span>:<span class='fl'>4</span>)</div><div class='img'><img src='nlme.mmkin-7.png' alt='' width='700' height='433' /></div><div class='input'>
+#&gt; 4.789774e-07 2.200661e-05 </div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>f_2</span>[<span class='st'>"FOMC-SFO"</span>, <span class='fl'>3</span>:<span class='fl'>4</span>])</div><div class='img'><img src='nlme.mmkin-4.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>f_nlme_fomc_sfo</span>, <span class='fl'>3</span>:<span class='fl'>4</span>)</div><div class='img'><img src='nlme.mmkin-5.png' alt='' width='700' height='433' /></div><div class='input'>
+ <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>f_2</span>[<span class='st'>"DFOP-SFO"</span>, <span class='fl'>3</span>:<span class='fl'>4</span>])</div><div class='img'><img src='nlme.mmkin-6.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>f_nlme_dfop_sfo</span>, <span class='fl'>3</span>:<span class='fl'>4</span>)</div><div class='img'><img src='nlme.mmkin-7.png' alt='' width='700' height='433' /></div><div class='input'>
<span class='fu'><a href='https://rdrr.io/r/stats/anova.html'>anova</a></span>(<span class='no'>f_nlme_dfop_sfo</span>, <span class='no'>f_nlme_fomc_sfo</span>, <span class='no'>f_nlme_sfo_sfo</span>)</div><div class='output co'>#&gt; Model df AIC BIC logLik Test L.Ratio p-value
-#&gt; f_nlme_dfop_sfo 1 13 843.8541 884.6194 -408.9270
-#&gt; f_nlme_fomc_sfo 2 11 818.5149 853.0087 -398.2575 1 vs 2 21.33913 &lt;.0001
-#&gt; f_nlme_sfo_sfo 3 9 1085.1821 1113.4042 -533.5910 2 vs 3 270.66712 &lt;.0001</div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/stats/anova.html'>anova</a></span>(<span class='no'>f_nlme_dfop_sfo</span>, <span class='no'>f_nlme_sfo_sfo</span>) <span class='co'># if we ignore FOMC</span></div><div class='output co'>#&gt; Model df AIC BIC logLik Test L.Ratio p-value
-#&gt; f_nlme_dfop_sfo 1 13 843.8541 884.6194 -408.927
-#&gt; f_nlme_sfo_sfo 2 9 1085.1821 1113.4042 -533.591 1 vs 2 249.328 &lt;.0001</div><div class='input'>
+#&gt; f_nlme_dfop_sfo 1 13 843.8547 884.6201 -408.9273
+#&gt; f_nlme_fomc_sfo 2 11 818.5149 853.0087 -398.2575 1 vs 2 21.33975 &lt;.0001
+#&gt; f_nlme_sfo_sfo 3 9 1085.1821 1113.4043 -533.5910 2 vs 3 270.66716 &lt;.0001</div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/stats/anova.html'>anova</a></span>(<span class='no'>f_nlme_dfop_sfo</span>, <span class='no'>f_nlme_sfo_sfo</span>) <span class='co'># if we ignore FOMC</span></div><div class='output co'>#&gt; Model df AIC BIC logLik Test L.Ratio p-value
+#&gt; f_nlme_dfop_sfo 1 13 843.8547 884.6201 -408.9273
+#&gt; f_nlme_sfo_sfo 2 9 1085.1821 1113.4043 -533.5910 1 vs 2 249.3274 &lt;.0001</div><div class='input'>
<span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>f_nlme_sfo_sfo</span>)</div><div class='output co'>#&gt; $ff
#&gt; parent_sink parent_A1 A1_sink
-#&gt; 0.5912435 0.4087565 1.0000000
+#&gt; 0.5912432 0.4087568 1.0000000
#&gt;
#&gt; $distimes
-#&gt; DT50 DT90
-#&gt; parent 19.13517 63.56565
-#&gt; A1 66.02149 219.31865
+#&gt; DT50 DT90
+#&gt; parent 19.13518 63.5657
+#&gt; A1 66.02155 219.3189
#&gt; </div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>f_nlme_dfop_sfo</span>)</div><div class='output co'>#&gt; $ff
-#&gt; parent_A1 parent_sink A1_sink
-#&gt; 0.2768571 0.7231429 1.0000000
+#&gt; parent_A1 parent_sink
+#&gt; 0.2768574 0.7231426
#&gt;
#&gt; $distimes
-#&gt; DT50 DT90 DT50_k1 DT50_k2
-#&gt; parent 11.07092 104.6325 4.462389 46.2085
-#&gt; A1 162.30937 539.1801 NA NA
+#&gt; DT50 DT90 DT50_k1 DT50_k2
+#&gt; parent 11.07091 104.6320 4.462384 46.20825
+#&gt; A1 162.30536 539.1667 NA NA
#&gt; </div><div class='input'># }
</div></pre>
</div>
- <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
- <h2>Contents</h2>
- <ul class="nav nav-pills nav-stacked">
- <li><a href="#arguments">Arguments</a></li>
- <li><a href="#value">Value</a></li>
- <li><a href="#see-also">See also</a></li>
- <li><a href="#examples">Examples</a></li>
- </ul>
-
+ <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+ <nav id="toc" data-toggle="toc" class="sticky-top">
+ <h2 data-toc-skip>Contents</h2>
+ </nav>
</div>
</div>
@@ -455,7 +445,7 @@ parameters taken from the mmkin object are used</p></td>
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
</div>
</footer>

Contact - Imprint