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class="page-header"> - <h1>Three experimental datasets from two water sediment systems and one soil</h1> - - <div class="hidden name"><code>test_data_from_UBA_2014.Rd</code></div> +<li class="nav-item"><a class="nav-link" href="../coverage/coverage.html">Test coverage</a></li> +<li class="nav-item"><a class="nav-link" href="../news/index.html">News</a></li> + </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search"> + <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li> +<li class="nav-item"><a class="external-link nav-link" href="https://github.com/jranke/mkin/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li> + </ul></div> + + + </div> +</nav><div class="container template-reference-topic"> +<div class="row"> + <main id="main" class="col-md-9"><div class="page-header"> + + <h1>Three experimental datasets from two water sediment systems and one soil</h1> + + <div class="d-none name"><code>test_data_from_UBA_2014.Rd</code></div> </div> - <div class="ref-description"> + <div class="ref-description section level2"> <p>The datasets were used for the comparative validation of several kinetic evaluation software packages (Ranke, 2014).</p> </div> - <div id="ref-usage"> + <div class="section level2"> + <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2> <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="va">test_data_from_UBA_2014</span></span></code></pre></div> </div> - <div id="format"> - <h2>Format</h2> + <div class="section level2"> + <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2> <p>A list containing three datasets as an R6 class defined by <code><a href="mkinds.html">mkinds</a></code>. Each dataset has, among others, the following components</p><dl><dt><code>title</code></dt> <dd><p>The name of the dataset, e.g. <code>UBA_2014_WS_river</code></p></dd> @@ -127,16 +81,16 @@ <dt><code>data</code></dt> <dd><p>A data frame with the data in the form expected by <code><a href="mkinfit.html">mkinfit</a></code></p></dd> - + </dl></div> - <div id="source"> - <h2>Source</h2> + <div class="section level2"> + <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>Ranke (2014) Prüfung und Validierung von Modellierungssoftware als Alternative zu ModelMaker 4.0, Umweltbundesamt Projektnummer 27452</p> </div> - <div id="ref-examples"> - <h2>Examples</h2> + <div class="section level2"> + <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2> <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span> <span class="co"># \dontrun{</span></span></span> <span class="r-in"><span> <span class="co"># This is a level P-II evaluation of the dataset according to the FOCUS kinetics</span></span></span> <span class="r-in"><span> <span class="co"># guidance. Due to the strong correlation of the parameter estimates, the</span></span></span> @@ -153,19 +107,25 @@ <span class="r-plt img"><img src="test_data_from_UBA_2014-1.png" alt="" width="700" height="433"></span> <span class="r-in"><span></span></span> <span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_river</span><span class="op">)</span><span class="op">$</span><span class="va">bpar</span></span></span> -<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Could not calculate correlation; no covariance matrix</span> -<span class="r-out co"><span class="r-pr">#></span> Estimate se_notrans t value Pr(>t) Lower Upper</span> -<span class="r-out co"><span class="r-pr">#></span> parent_w_0 95.91998118 NA NA NA NA NA</span> -<span class="r-out co"><span class="r-pr">#></span> k_parent_w 0.41145375 NA NA NA NA NA</span> -<span class="r-out co"><span class="r-pr">#></span> k_parent_s 0.04663944 NA NA NA NA NA</span> -<span class="r-out co"><span class="r-pr">#></span> f_parent_w_to_parent_s 0.12467894 NA NA NA NA NA</span> -<span class="r-out co"><span class="r-pr">#></span> f_parent_s_to_parent_w 0.50000000 NA NA NA NA NA</span> -<span class="r-out co"><span class="r-pr">#></span> sigma 3.13612618 NA NA NA NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> Estimate se_notrans t value Pr(>t)</span> +<span class="r-out co"><span class="r-pr">#></span> parent_w_0 95.98567441 2.16285684 44.3791159 1.245593e-17</span> +<span class="r-out co"><span class="r-pr">#></span> k_parent_w 0.42068803 0.05573864 7.5475120 8.752928e-07</span> +<span class="r-out co"><span class="r-pr">#></span> k_parent_s 0.07419672 0.10108562 0.7339987 2.371337e-01</span> +<span class="r-out co"><span class="r-pr">#></span> f_parent_w_to_parent_s 0.14336920 0.05809346 2.4679062 1.305295e-02</span> +<span class="r-out co"><span class="r-pr">#></span> f_parent_s_to_parent_w 1.00000000 3.13868615 0.3186046 3.772097e-01</span> +<span class="r-out co"><span class="r-pr">#></span> sigma 2.98287858 0.68923267 4.3278253 2.987160e-04</span> +<span class="r-out co"><span class="r-pr">#></span> Lower Upper</span> +<span class="r-out co"><span class="r-pr">#></span> parent_w_0 91.48420501 100.4871438</span> +<span class="r-out co"><span class="r-pr">#></span> k_parent_w 0.36593946 0.4836276</span> +<span class="r-out co"><span class="r-pr">#></span> k_parent_s 0.02289956 0.2404043</span> +<span class="r-out co"><span class="r-pr">#></span> f_parent_w_to_parent_s 0.08180934 0.2391848</span> +<span class="r-out co"><span class="r-pr">#></span> f_parent_s_to_parent_w 0.00000000 1.0000000</span> +<span class="r-out co"><span class="r-pr">#></span> sigma 2.00184022 3.9639169</span> <span class="r-in"><span> <span class="fu"><a href="mkinerrmin.html">mkinerrmin</a></span><span class="op">(</span><span class="va">f_river</span><span class="op">)</span></span></span> -<span class="r-out co"><span class="r-pr">#></span> err.min n.optim df</span> -<span class="r-out co"><span class="r-pr">#></span> All data 0.1090929 5 6</span> -<span class="r-out co"><span class="r-pr">#></span> parent_w 0.0817436 3 3</span> -<span class="r-out co"><span class="r-pr">#></span> parent_s 0.1619965 2 3</span> +<span class="r-out co"><span class="r-pr">#></span> err.min n.optim df</span> +<span class="r-out co"><span class="r-pr">#></span> All data 0.09246946 5 6</span> +<span class="r-out co"><span class="r-pr">#></span> parent_w 0.06377096 3 3</span> +<span class="r-out co"><span class="r-pr">#></span> parent_s 0.20882325 2 3</span> <span class="r-in"><span></span></span> <span class="r-in"><span> <span class="co"># This is the evaluation used for the validation of software packages</span></span></span> <span class="r-in"><span> <span class="co"># in the expertise from 2014</span></span></span> @@ -213,27 +173,23 @@ <span class="r-in"><span> <span class="co"># }</span></span></span> </code></pre></div> </div> - </div> - <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> - <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> - </nav></div> -</div> + </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2> + </nav></aside></div> - <footer><div class="copyright"> - <p></p><p>Developed by Johannes Ranke.</p> + <footer><div class="pkgdown-footer-left"> + <p>Developed by Johannes Ranke.</p> </div> -<div class="pkgdown"> - <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> +<div class="pkgdown-footer-right"> + <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p> </div> - </footer></div> + </footer></div> + - - </body></html> |