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<div class="ref-description"> + <div class="ref-description section level2"> <p>The transformations are intended to map parameters that should only take on restricted values to the full scale of real numbers. For kinetic rate constants and other parameters that can only take on positive values, a @@ -122,7 +79,8 @@ formations fractions that should always sum up to 1 and can not be negative, the <a href="ilr.html">ilr</a> transformation is used.</p> </div> - <div id="ref-usage"> + <div class="section level2"> + <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2> <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">transform_odeparms</span><span class="op">(</span></span> <span> <span class="va">parms</span>,</span> <span> <span class="va">mkinmod</span>,</span> @@ -138,21 +96,23 @@ the <a href="ilr.html">ilr</a> transformation is used.</p> <span><span class="op">)</span></span></code></pre></div> </div> - <div id="arguments"> - <h2>Arguments</h2> - <dl><dt>parms</dt> + <div class="section level2"> + <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> + + +<dl><dt id="arg-parms">parms<a class="anchor" aria-label="anchor" href="#arg-parms"></a></dt> <dd><p>Parameters of kinetic models as used in the differential equations.</p></dd> -<dt>mkinmod</dt> +<dt id="arg-mkinmod">mkinmod<a class="anchor" aria-label="anchor" href="#arg-mkinmod"></a></dt> <dd><p>The kinetic model of class <a href="mkinmod.html">mkinmod</a>, containing the names of the model variables that are needed for grouping the formation fractions before <a href="ilr.html">ilr</a> transformation, the parameter names and the information if the pathway to sink is included in the model.</p></dd> -<dt>transform_rates</dt> +<dt id="arg-transform-rates">transform_rates<a class="anchor" aria-label="anchor" href="#arg-transform-rates"></a></dt> <dd><p>Boolean specifying if kinetic rate constants should be transformed in the model specification used in the fitting for better compliance with the assumption of normal distribution of the estimator. If @@ -161,7 +121,7 @@ log-transformed, as well as k1 and k2 rate constants for the DFOP and HS models and the break point tb of the HS model.</p></dd> -<dt>transform_fractions</dt> +<dt id="arg-transform-fractions">transform_fractions<a class="anchor" aria-label="anchor" href="#arg-transform-fractions"></a></dt> <dd><p>Boolean specifying if formation fractions constants should be transformed in the model specification used in the fitting for better compliance with the assumption of normal distribution @@ -174,30 +134,28 @@ two or more formation fractions need to be transformed whose sum cannot exceed one, the <a href="ilr.html">ilr</a> transformation is used.</p></dd> -<dt>transparms</dt> +<dt id="arg-transparms">transparms<a class="anchor" aria-label="anchor" href="#arg-transparms"></a></dt> <dd><p>Transformed parameters of kinetic models as used in the fitting procedure.</p></dd> </dl></div> - <div id="value"> - <h2>Value</h2> - - -<p>A vector of transformed or backtransformed parameters</p> + <div class="section level2"> + <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> + <p>A vector of transformed or backtransformed parameters</p> </div> - <div id="details"> - <h2>Details</h2> + <div class="section level2"> + <h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2> <p>The transformation of sets of formation fractions is fragile, as it supposes the same ordering of the components in forward and backward transformation. This is no problem for the internal use in <a href="mkinfit.html">mkinfit</a>.</p> </div> - <div id="author"> - <h2>Author</h2> + <div class="section level2"> + <h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2> <p>Johannes Ranke</p> </div> - <div id="ref-examples"> - <h2>Examples</h2> + <div class="section level2"> + <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2> <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span> <span class="r-in"><span><span class="va">SFO_SFO</span> <span class="op"><-</span> <span class="fu"><a href="mkinmod.html">mkinmod</a></span><span class="op">(</span></span></span> <span class="r-in"><span> parent <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>type <span class="op">=</span> <span class="st">"SFO"</span>, to <span class="op">=</span> <span class="st">"m1"</span>, sink <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span>,</span></span> @@ -313,27 +271,23 @@ This is no problem for the internal use in <a href="mkinfit.html">mkinfit</a>.</ <span class="r-in"><span></span></span> </code></pre></div> </div> - </div> - <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> - <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> - </nav></div> -</div> + </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2> + </nav></aside></div> - <footer><div class="copyright"> - <p></p><p>Developed by Johannes Ranke.</p> + <footer><div class="pkgdown-footer-left"> + <p>Developed by Johannes Ranke.</p> </div> -<div class="pkgdown"> - <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> +<div class="pkgdown-footer-right"> + <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p> </div> - </footer></div> + </footer></div> + - - </body></html> |