diff options
Diffstat (limited to 'inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd')
| -rw-r--r-- | inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd index 71d62677..0baf866a 100644 --- a/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd +++ b/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd @@ -220,9 +220,13 @@ Separate evaluations of all datasets are performed with constant variance and using two-component error. ```{r path-1-sep, dependson = c("path-1-degmod", "ds")} -cl <- start_cluster(n_cores) +cl_path <- NULL +# Uncomment the next line for parallel processing. This does not work on Windows, +# as stored dlls (that we need for caching to work) do not seem to work on +# PSOCK clusters generated on Windows. +# cl_path <- start_cluster(n_cores) sforb_sep_const <- mmkin(list(sforb_path = m_sforb_sfo2), ds, - cluster = cl, quiet = TRUE) + cluster = cl_path, quiet = TRUE) sforb_sep_tc <- update(sforb_sep_const, error_model = "tc") ``` @@ -240,7 +244,7 @@ model that was identified for the parent degradation, are attempted below. path_1 <- mhmkin(list(sforb_sep_const, sforb_sep_tc), no_random_effect = c("lambda_free_0", "log_k_lambda_free_bound"), covariates = covariates, covariate_models = list(log_k_lambda_bound_free ~ pH), - cluster = cl) + cluster = cl_path) ``` ```{r dependson = "path-1"} @@ -294,7 +298,7 @@ endpoints(parent_best_pH_2) ``` ```{r} -stopCluster(cl) +if (!is.null(cl_path)) stopCluster(cl_path) ``` \clearpage |