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Diffstat (limited to 'log/test.log')
| -rw-r--r-- | log/test.log | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/log/test.log b/log/test.log new file mode 100644 index 00000000..266a566f --- /dev/null +++ b/log/test.log @@ -0,0 +1,51 @@ +ℹ Loading mkin +Loading required package: parallel +ℹ Testing mkin +✔ | F W S OK | Context +✔ | 5 | AIC calculation +✔ | 5 | Analytical solutions for coupled models [3.2s] +✔ | 5 | Calculation of Akaike weights +✔ | 3 | Export dataset for reading into CAKE +✔ | 12 | Confidence intervals and p-values [1.0s] +✔ | 1 12 | Dimethenamid data from 2018 [31.6s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data +Reason: Fitting this ODE model with saemix takes about 15 minutes on my system +──────────────────────────────────────────────────────────────────────────────── +✔ | 14 | Error model fitting [5.1s] +✔ | 5 | Time step normalisation +✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] +✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] +✔ | 1 | Fitting the logistic model [0.2s] +✔ | 1 12 | Nonlinear mixed-effects models [0.2s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits +Reason: Fitting with saemix takes around 10 minutes when using deSolve +──────────────────────────────────────────────────────────────────────────────── +✔ | 3 | Test dataset classes mkinds and mkindsg +✔ | 10 | Special cases of mkinfit calls [0.4s] +✔ | 3 | mkinfit features [0.7s] +✔ | 8 | mkinmod model generation and printing [0.2s] +✔ | 3 | Model predictions with mkinpredict [0.4s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s] +✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s] +✔ | 16 | Plotting [10.6s] +✔ | 4 | Residuals extracted from mkinfit models +✔ | 25 | saemix parent models [172.9s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] +✔ | 7 | Fitting the SFORB model [3.7s] +✔ | 1 | Summaries of old mkinfit objects +✔ | 5 | Summary [0.2s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] +✔ | 9 | Hypothesis tests [7.8s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] + +══ Results ═════════════════════════════════════════════════════════════════════ +Duration: 255.9 s + +── Skipped tests ────────────────────────────────────────────────────────────── +• Fitting this ODE model with saemix takes about 15 minutes on my system (1) +• Fitting with saemix takes around 10 minutes when using deSolve (1) + +[ FAIL 0 | WARN 0 | SKIP 2 | PASS 225 ] |